RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 CCNA2P20248 432 aa9.77□□□□□ -0.85
TDP1-211ENST00000555178 IL11P20809 199 aa9.77□□□□□ -0.85
TDP1-211ENST00000555178 EPHA2P29317 976 aa9.77□□□□□ -0.85
TDP1-211ENST00000555178 CLK3P49761 638 aaKnown RBP9.77□□□□□ -0.85
TDP1-211ENST00000555178 P2RX1P51575 399 aa9.77□□□□□ -0.85
TDP1-211ENST00000555178 ALDH3A2P51648 485 aa9.77□□□□□ -0.85
TDP1-211ENST00000555178 C17orf67Q0P5P2 114 aa9.77□□□□□ -0.85
TDP1-211ENST00000555178 TRAM2Q15035 370 aa9.77□□□□□ -0.85
TDP1-211ENST00000555178 QPRTQ15274 297 aa9.77□□□□□ -0.85
TDP1-211ENST00000555178 C6orf52Q5T4I8 152 aa9.77□□□□□ -0.85
TDP1-211ENST00000555178 PCSK4Q6UW60 755 aa9.77□□□□□ -0.85
TDP1-211ENST00000555178 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.77□□□□□ -0.85
TDP1-211ENST00000555178 GPR119Q8TDV5 335 aa9.77□□□□□ -0.85
TDP1-211ENST00000555178 ZNF184Q99676 751 aaPredicted RBP9.77□□□□□ -0.85
TDP1-211ENST00000555178 TRIM2Q9C040 744 aa9.77□□□□□ -0.85
TDP1-211ENST00000555178 GABARAPL1Q9H0R8 117 aa9.77□□□□□ -0.85
TDP1-211ENST00000555178 SACM1LQ9NTJ5 587 aa9.77□□□□□ -0.85
TDP1-211ENST00000555178 C20orf141Q9NUB4 165 aa9.77□□□□□ -0.85
TDP1-211ENST00000555178 CNIH4Q9P003 139 aa9.77□□□□□ -0.85
TDP1-211ENST00000555178 KIF17Q9P2E2 1029 aa9.77□□□□□ -0.85
TDP1-211ENST00000555178 EFNA2O43921 213 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 EIF4E2O60573 245 aaKnown RBP9.76□□□□□ -0.85
TDP1-211ENST00000555178 CLIC3O95833 236 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 P04436 131 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 IGFBP1P08833 259 aaPredicted RBP9.76□□□□□ -0.85
TDP1-211ENST00000555178 GPR4P46093 362 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 COPZ1P61923 177 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 CBFBQ13951 182 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 ZNF766Q5HY98 468 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 PGBD2Q6P3X8 592 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 FAHD1Q6P587 224 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 ZNF613Q6PF04 617 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 ZNF730Q6ZMV8 503 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 PRICKLE2Q7Z3G6 844 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 ZER1Q7Z7L7 766 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 NRMQ8IXM6 262 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 ZNF440Q8IYI8 595 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 FADS6Q8N9I5 356 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 OR2M7Q8NG81 312 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 SLC35B4Q969S0 331 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 FAM46AQ96IP4 442 aaKnown RBP9.76□□□□□ -0.85
TDP1-211ENST00000555178 SGCZQ96LD1 299 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 ZNF597Q96LX8 424 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 MBOAT4Q96T53 435 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 MEPEQ9NQ76 525 aaPredicted RBP9.76□□□□□ -0.85
TDP1-211ENST00000555178 RPS6KB2Q9UBS0 482 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 PRDM4Q9UKN5 801 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 TMCC3Q9ULS5 477 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 KIAA1549Q9HCM3 1950 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 FAM166BA8MTA8 275 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 LRRN3E7EW58 273 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 FAAHO00519 579 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 CHP2O43745 196 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 NME2P1O60361 137 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 OPN1LWP04000 364 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 CNR1P21554 472 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 NME2P22392 152 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 CBLP22681 906 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 IGFBP5P24593 272 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 TACR3P29371 465 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 ARHGDIAP52565 204 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 UCNP55089 124 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 ZSWIM7Q19AV6 140 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 PLEKHN1Q494U1 663 aaPredicted RBP9.76□□□□□ -0.85
TDP1-211ENST00000555178 NADK2Q4G0N4 442 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 KDM4DQ6B0I6 523 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 WBP2NLQ6ICG8 309 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 SLC25A25Q6KCM7 469 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 Q6ZPB1 254 aaPredicted RBP9.76□□□□□ -0.85
TDP1-211ENST00000555178 MISPQ8IVT2 679 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 TOR1AIP2Q8NFQ8 470 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 POC1BQ8TC44 478 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 SLC38A4Q969I6 547 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 NRBF2Q96F24 287 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 SCMH1Q96GD3 660 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 RBM4BQ9BQ04 359 aaKnown RBP9.76□□□□□ -0.85
TDP1-211ENST00000555178 RBM4Q9BWF3 364 aaKnown RBP9.76□□□□□ -0.85
TDP1-211ENST00000555178 RNF32Q9H0A6 362 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 VCX3BQ9H321 246 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 TOR3AQ9H497 397 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 USE1Q9NZ43 259 aa9.76□□□□□ -0.85
TDP1-211ENST00000555178 PCDHGA9Q9Y5G4 932 aaKnown RBP9.76□□□□□ -0.85
TDP1-211ENST00000555178 GTF3C1Q12789 2109 aa9.75□□□□□ -0.85
TDP1-211ENST00000555178 IGKV1D-42A0A075B6H8 117 aa9.75□□□□□ -0.85
TDP1-211ENST00000555178 ANKUB1A6NFN9 424 aa9.75□□□□□ -0.85
TDP1-211ENST00000555178 SNPHO15079 494 aa9.75□□□□□ -0.85
TDP1-211ENST00000555178 SOX14O95416 240 aa9.75□□□□□ -0.85
TDP1-211ENST00000555178 SLC1A3P43003 542 aa9.75□□□□□ -0.85
TDP1-211ENST00000555178 GSSP48637 474 aa9.75□□□□□ -0.85
TDP1-211ENST00000555178 MASP1P48740 699 aa9.75□□□□□ -0.85
TDP1-211ENST00000555178 MEOX1P50221 254 aa9.75□□□□□ -0.85
TDP1-211ENST00000555178 FOXF1Q12946 379 aa9.75□□□□□ -0.85
TDP1-211ENST00000555178 GK3PQ14409 553 aa9.75□□□□□ -0.85
TDP1-211ENST00000555178 TIGD3Q6B0B8 471 aa9.75□□□□□ -0.85
TDP1-211ENST00000555178 SLC30A6Q6NXT4 461 aa9.75□□□□□ -0.85
TDP1-211ENST00000555178 TMEM81Q6P7N7 255 aa9.75□□□□□ -0.85
TDP1-211ENST00000555178 ULK3Q6PHR2 472 aa9.75□□□□□ -0.85
TDP1-211ENST00000555178 ATG4DQ86TL0 474 aaPredicted RBP9.75□□□□□ -0.85
TDP1-211ENST00000555178 TMEM239Q8WW34 195 aa9.75□□□□□ -0.85
TDP1-211ENST00000555178 ACOT11Q8WXI4 607 aaPredicted RBP9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms