RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 NIPAL3Q6P499 406 aa1.95□□□□□ -2.1
VRK1-202ENST00000553683 GDPD3Q7L5L3 318 aa1.95□□□□□ -2.1
VRK1-202ENST00000553683 CATSPER4Q7RTX7 472 aa1.95□□□□□ -2.1
VRK1-202ENST00000553683 C16orf62Q7Z3J2 963 aa1.95□□□□□ -2.1
VRK1-202ENST00000553683 LHFPL4Q7Z7J7 247 aa1.95□□□□□ -2.1
VRK1-202ENST00000553683 TMEM17Q86X19 198 aa1.95□□□□□ -2.1
VRK1-202ENST00000553683 HDDC3Q8N4P3 179 aa1.95□□□□□ -2.1
VRK1-202ENST00000553683 OR6X1Q8NH79 312 aa1.95□□□□□ -2.1
VRK1-202ENST00000553683 HPDLQ96IR7 371 aa1.95□□□□□ -2.1
VRK1-202ENST00000553683 SAMD8Q96LT4 415 aa1.95□□□□□ -2.1
VRK1-202ENST00000553683 TSGA13Q96PP4 275 aa1.95□□□□□ -2.1
VRK1-202ENST00000553683 VPS35Q96QK1 796 aa1.95□□□□□ -2.1
VRK1-202ENST00000553683 TESK2Q96S53 571 aa1.95□□□□□ -2.1
VRK1-202ENST00000553683 CYP2S1Q96SQ9 504 aa1.95□□□□□ -2.1
VRK1-202ENST00000553683 POLR2J2Q9GZM3 115 aaKnown RBP1.95□□□□□ -2.1
VRK1-202ENST00000553683 NAT10Q9H0A0 1025 aaKnown RBP1.95□□□□□ -2.1
VRK1-202ENST00000553683 POLR2J3Q9H1A7 115 aaKnown RBP1.95□□□□□ -2.1
VRK1-202ENST00000553683 SLC25A22Q9H936 323 aa1.95□□□□□ -2.1
VRK1-202ENST00000553683 VAT1LQ9HCJ6 419 aa1.95□□□□□ -2.1
VRK1-202ENST00000553683 QPCTLQ9NXS2 382 aa1.95□□□□□ -2.1
VRK1-202ENST00000553683 AIPL1Q9NZN9 384 aa1.95□□□□□ -2.1
VRK1-202ENST00000553683 C6orf203Q9P0P8 240 aaPredicted RBP1.95□□□□□ -2.1
VRK1-202ENST00000553683 NUFIP1Q9UHK0 495 aaKnown RBP1.95□□□□□ -2.1
VRK1-202ENST00000553683 BLOC1S6Q9UL45 172 aa1.95□□□□□ -2.1
VRK1-202ENST00000553683 ATP6V0A2Q9Y487 856 aa1.95□□□□□ -2.1
VRK1-202ENST00000553683 UGT2A1Q9Y4X1 527 aa1.95□□□□□ -2.1
VRK1-202ENST00000553683 GPRASP1Q5JY77 1395 aa1.95□□□□□ -2.1
VRK1-202ENST00000553683 SCN2AQ99250 2005 aa1.95□□□□□ -2.1
VRK1-202ENST00000553683 RAD50Q92878 1312 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 IGLV4-69A0A075B6H9 119 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 IGLV4-60A0A075B6I1 120 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 GJE1A6NN92 205 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 E7ESA3 106 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 CLDN5O00501 218 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 JAK2O60674 1132 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 E2F6O75461 281 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 ZNF324O75467 553 aaPredicted RBP1.94□□□□□ -2.1
VRK1-202ENST00000553683 MMP1P03956 469 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 RCC1P18754 421 aaPredicted RBP1.94□□□□□ -2.1
VRK1-202ENST00000553683 PAICSP22234 425 aaKnown RBP1.94□□□□□ -2.1
VRK1-202ENST00000553683 CCNCP24863 283 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 RPS10P46783 165 aaKnown RBP1.94□□□□□ -2.1
VRK1-202ENST00000553683 TFPI2P48307 235 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 LHX2P50458 406 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 MTTPP55157 894 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 YBEYP58557 167 aaPredicted RBP1.94□□□□□ -2.1
VRK1-202ENST00000553683 CTAG1AP78358 180 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 HSF2Q03933 536 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 PPP2R5CQ13362 524 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 ARL6IP1Q15041 203 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 TAF7Q15545 349 aaPredicted RBP1.94□□□□□ -2.1
VRK1-202ENST00000553683 ZSCAN26Q16670 478 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 TMEM52BQ4KMG9 183 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 C1orf146Q5VVC0 180 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 FAM199XQ6PEV8 388 aaPredicted RBP1.94□□□□□ -2.1
VRK1-202ENST00000553683 MTERF4Q7Z6M4 381 aaKnown RBP1.94□□□□□ -2.1
VRK1-202ENST00000553683 DRAXINQ8NBI3 349 aaPredicted RBP1.94□□□□□ -2.1
VRK1-202ENST00000553683 OR8H1Q8NGG4 311 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 M1APQ8TC57 530 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 TCTEX1D2Q8WW35 142 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 ZNF606Q8WXB4 792 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 MYLPFQ96A32 169 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 AKR1E2Q96JD6 320 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 KCNK16Q96T55 309 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 HIST1H4GQ99525 98 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 SLC39A3Q9BRY0 314 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 SELENOIQ9C0D9 397 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 IQCGQ9H095 443 aaKnown RBP1.94□□□□□ -2.1
VRK1-202ENST00000553683 DBNDD1Q9H9R9 158 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 PLGRKTQ9HBL7 147 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 CFAP45Q9UL16 551 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 MGAT4BQ9UQ53 548 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 ASF1AQ9Y294 204 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 DDX49Q9Y6V7 483 aaKnown RBP1.94□□□□□ -2.1
VRK1-202ENST00000553683 NISCHQ9Y2I1 1504 aa1.94□□□□□ -2.1
VRK1-202ENST00000553683 PPIAL4CA0A0B4J2A2 164 aa1.93□□□□□ -2.1
VRK1-202ENST00000553683 IGHV2-70DA0A0C4DH43 119 aa1.93□□□□□ -2.1
VRK1-202ENST00000553683 LINC00854A0A1B0GVQ3 168 aa1.93□□□□□ -2.1
VRK1-202ENST00000553683 ESYT2A0FGR8 921 aa1.93□□□□□ -2.1
VRK1-202ENST00000553683 LRCOL1A6NCL2 159 aa1.93□□□□□ -2.1
VRK1-202ENST00000553683 A6NDX4 124 aa1.93□□□□□ -2.1
VRK1-202ENST00000553683 H3BMQ9 156 aa1.93□□□□□ -2.1
VRK1-202ENST00000553683 GFYI3L273 518 aa1.93□□□□□ -2.1
VRK1-202ENST00000553683 M0QX08 132 aa1.93□□□□□ -2.1
VRK1-202ENST00000553683 DLGAP1O14490 977 aa1.93□□□□□ -2.1
VRK1-202ENST00000553683 IGF1P05019 195 aa1.93□□□□□ -2.1
VRK1-202ENST00000553683 PPIAL4GP0DN37 164 aa1.93□□□□□ -2.1
VRK1-202ENST00000553683 CRISP2P16562 243 aa1.93□□□□□ -2.1
VRK1-202ENST00000553683 STMN1P16949 149 aa1.93□□□□□ -2.1
VRK1-202ENST00000553683 ARF4P18085 180 aaPredicted RBP1.93□□□□□ -2.1
VRK1-202ENST00000553683 CYP2B6P20813 491 aa1.93□□□□□ -2.1
VRK1-202ENST00000553683 CD9P21926 228 aa1.93□□□□□ -2.1
VRK1-202ENST00000553683 BDKRB1P46663 353 aa1.93□□□□□ -2.1
VRK1-202ENST00000553683 SH3BGRP55822 239 aaPredicted RBP1.93□□□□□ -2.1
VRK1-202ENST00000553683 LRRC74AQ0VAA2 488 aa1.93□□□□□ -2.1
VRK1-202ENST00000553683 SPP2Q13103 211 aa1.93□□□□□ -2.1
VRK1-202ENST00000553683 EIF4EBP1Q13541 118 aaPredicted RBP1.93□□□□□ -2.1
VRK1-202ENST00000553683 GPNMBQ14956 572 aa1.93□□□□□ -2.1
VRK1-202ENST00000553683 FILIP1LQ4L180 1135 aa1.93□□□□□ -2.1
VRK1-202ENST00000553683 KLF17Q5JT82 389 aaPredicted RBP1.93□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms