RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 BEND4Q6ZU67 534 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 PLEKHM3Q6ZWE6 761 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 FCRLAQ7L513 359 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 PNPT1Q8TCS8 783 aaKnown RBP10.57□□□□□ -0.72
HDAC4-216ENST00000544989 RNF128Q8TEB7 428 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 TSPEARQ8WU66 669 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 NINJ1Q92982 152 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 ZHX1-C8orf76Q96EF9 292 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 NPAS1Q99742 590 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 EBF4Q9BQW3 602 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 POLDIP3Q9BY77 421 aaKnown RBP10.57□□□□□ -0.72
HDAC4-216ENST00000544989 CLEC4MQ9H2X3 399 aaPredicted RBP10.57□□□□□ -0.72
HDAC4-216ENST00000544989 ZNF226Q9NYT6 803 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 CCDC167Q9P0B6 97 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 KLHL9Q9P2J3 617 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 CHRNA9Q9UGM1 479 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 PCDHB14Q9Y5E9 798 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 GMEB1Q9Y692 573 aa10.57□□□□□ -0.72
HDAC4-216ENST00000544989 CENPVL1A0A0U1RR11 272 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 PRAMEF27A3QJZ7 478 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 CFAP73A6NFT4 308 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 EVPLLA8MZ36 301 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 C5orf58C9J3I9 102 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 NR5A2O00482 541 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 DNPH1O43598 174 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 SASH3O75995 380 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 OPN1LWP04000 364 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 TFPTP0C1Z6 253 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 TROVE2P10155 538 aaKnown RBP eCLIP10.56□□□□□ -0.72
HDAC4-216ENST00000544989 BMP2P12643 396 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 ETFAP13804 333 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 ENPP1P22413 925 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 UGT2B10P36537 528 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 SLC1A3P43003 542 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 RNF144AP50876 292 aaPredicted RBP10.56□□□□□ -0.72
HDAC4-216ENST00000544989 MVDP53602 400 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 COPZ1P61923 177 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 AGKQ53H12 422 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 SYT14P1Q58G82 188 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 RNF220Q5VTB9 566 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 ZNF550Q7Z398 422 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 OR52P1PQ8NH57 321 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 BBS10Q8TAM1 723 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 LINC01560Q8TB33 94 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 SLC38A5Q8WUX1 472 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 SLC35B4Q969S0 331 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 ZG16BQ96DA0 208 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 USB1Q9BQ65 265 aaKnown RBP10.56□□□□□ -0.72
HDAC4-216ENST00000544989 KLHDC3Q9BQ90 382 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 CCDC106Q9BWC9 280 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 PAIP1Q9H074 479 aaKnown RBP10.56□□□□□ -0.72
HDAC4-216ENST00000544989 OPN3Q9H1Y3 402 aaPredicted RBP10.56□□□□□ -0.72
HDAC4-216ENST00000544989 OR10A4Q9H209 315 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 A4GALTQ9NPC4 353 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 KLHL13Q9P2N7 655 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 HDGFL3Q9Y3E1 203 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 TESMINQ9Y4I5 508 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 HEATR5AQ86XA9 2040 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 MPDZO75970 2070 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 DSPPQ9NZW4 1301 aa10.56□□□□□ -0.72
HDAC4-216ENST00000544989 A0A1W2PP18 115 aa10.55□□□□□ -0.72
HDAC4-216ENST00000544989 SULT2B1O00204 365 aa10.55□□□□□ -0.72
HDAC4-216ENST00000544989 ZNF208O43345 1280 aa10.55□□□□□ -0.72
HDAC4-216ENST00000544989 EFNA2O43921 213 aa10.55□□□□□ -0.72
HDAC4-216ENST00000544989 PMS2P2O95744 297 aa10.55□□□□□ -0.72
HDAC4-216ENST00000544989 BCHEP06276 602 aa10.55□□□□□ -0.72
HDAC4-216ENST00000544989 YES1P07947 543 aa10.55□□□□□ -0.72
HDAC4-216ENST00000544989 NCF2P19878 526 aaPredicted RBP10.55□□□□□ -0.72
HDAC4-216ENST00000544989 AGTR1P30556 359 aa10.55□□□□□ -0.72
HDAC4-216ENST00000544989 RYKP34925 604 aa10.55□□□□□ -0.72
HDAC4-216ENST00000544989 IDH2P48735 452 aaKnown RBP10.55□□□□□ -0.72
HDAC4-216ENST00000544989 POLR2HP52434 150 aaKnown RBP10.55□□□□□ -0.72
HDAC4-216ENST00000544989 SNTB1Q13884 538 aaKnown RBP10.55□□□□□ -0.72
HDAC4-216ENST00000544989 MRPL2Q5T653 305 aaKnown RBP10.55□□□□□ -0.72
HDAC4-216ENST00000544989 SLC2A7Q6PXP3 512 aa10.55□□□□□ -0.72
HDAC4-216ENST00000544989 ZNF474Q6S9Z5 364 aaPredicted RBP10.55□□□□□ -0.72
HDAC4-216ENST00000544989 TMPPEQ6ZT21 453 aa10.55□□□□□ -0.72
HDAC4-216ENST00000544989 OLIG3Q7RTU3 272 aa10.55□□□□□ -0.72
HDAC4-216ENST00000544989 KRT73Q86Y46 540 aa10.55□□□□□ -0.72
HDAC4-216ENST00000544989 FUNDC1Q8IVP5 155 aa10.55□□□□□ -0.72
HDAC4-216ENST00000544989 ATP6V1C2Q8NEY4 427 aa10.55□□□□□ -0.72
HDAC4-216ENST00000544989 BHLHE22Q8NFJ8 381 aaPredicted RBP10.55□□□□□ -0.72
HDAC4-216ENST00000544989 DDIT4LQ96D03 193 aa10.55□□□□□ -0.72
HDAC4-216ENST00000544989 OR5B2Q96R09 309 aa10.55□□□□□ -0.72
HDAC4-216ENST00000544989 GPATCH1Q9BRR8 931 aaKnown RBP10.55□□□□□ -0.72
HDAC4-216ENST00000544989 MED18Q9BUE0 208 aa10.55□□□□□ -0.72
HDAC4-216ENST00000544989 SPATA5L1Q9BVQ7 753 aa10.55□□□□□ -0.72
HDAC4-216ENST00000544989 HDHD5Q9BXW7 423 aa10.55□□□□□ -0.72
HDAC4-216ENST00000544989 QRSL1Q9H0R6 528 aaKnown RBP10.55□□□□□ -0.72
HDAC4-216ENST00000544989 COQ10BQ9H8M1 238 aa10.55□□□□□ -0.72
HDAC4-216ENST00000544989 BCL2L10Q9HD36 194 aa10.55□□□□□ -0.72
HDAC4-216ENST00000544989 MED4Q9NPJ6 270 aa10.55□□□□□ -0.72
HDAC4-216ENST00000544989 SLC6A13Q9NSD5 602 aa10.55□□□□□ -0.72
HDAC4-216ENST00000544989 EMC3Q9P0I2 261 aa10.55□□□□□ -0.72
HDAC4-216ENST00000544989 LEF1Q9UJU2 399 aaPredicted RBP10.55□□□□□ -0.72
HDAC4-216ENST00000544989 TRAPPC4Q9Y296 219 aa10.55□□□□□ -0.72
HDAC4-216ENST00000544989 A0A0G2JND7 137 aa10.54□□□□□ -0.72
HDAC4-216ENST00000544989 CDHR4A6H8M9 788 aa10.54□□□□□ -0.72
HDAC4-216ENST00000544989 ZNF724A8MTY0 619 aa10.54□□□□□ -0.72
HDAC4-216ENST00000544989 ANGPT2O15123 496 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms