RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 PODNL1Q6PEZ8 512 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 ATRAIDQ6UW56 229 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 ALKAL2Q6UX46 152 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 LRRN1Q6UXK5 716 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 IL34Q6ZMJ4 242 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 USP53Q70EK8 1073 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 RHOUQ7L0Q8 258 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 ADCK2Q7Z695 626 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 TMPRSS11BQ86T26 416 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 NKAIN4Q8IVV8 208 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 NXPE1Q8N323 547 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 ZNF561Q8N587 486 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 TBC1D19Q8N5T2 526 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 MORN4Q8NDC4 146 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 BPIFCQ8NFQ6 507 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 OR4K5Q8NGD3 323 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 OR1J4Q8NGS1 313 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 BBS10Q8TAM1 723 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 CCDC107Q8WV48 283 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 POF1BQ8WVV4 589 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 SPRYD4Q8WW59 207 aaPredicted RBP6.21□□□□□ -1.42
USP28-207ENST00000538475 FCAMRQ8WWV6 532 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 TFGQ92734 400 aaPredicted RBP6.21□□□□□ -1.42
USP28-207ENST00000538475 IGSF8Q969P0 613 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 RAD51AP1Q96B01 352 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 MTFMTQ96DP5 389 aaKnown RBP6.21□□□□□ -1.42
USP28-207ENST00000538475 EAF1Q96JC9 268 aaPredicted RBP6.21□□□□□ -1.42
USP28-207ENST00000538475 LRFN5Q96NI6 719 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 LYSMD1Q96S90 227 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 PKP4Q99569 1192 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 EFCAB11Q9BUY7 163 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 MFFQ9GZY8 342 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 ASB8Q9H765 288 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 EXOSC3Q9NQT5 275 aaKnown RBP6.21□□□□□ -1.42
USP28-207ENST00000538475 CTPS2Q9NRF8 586 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 SEMA4GQ9NTN9 838 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 UFSP2Q9NUQ7 469 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 AHSPQ9NZD4 102 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 UPB1Q9UBR1 384 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 ZNF629Q9UEG4 869 aaPredicted RBP6.21□□□□□ -1.42
USP28-207ENST00000538475 A4GNTQ9UNA3 340 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 DMRT1Q9Y5R6 373 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 ETV7Q9Y603 341 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 POMT1Q9Y6A1 747 aa6.21□□□□□ -1.42
USP28-207ENST00000538475 TRAV20A0A0B4J274 112 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 GNG14A0A1W2PPG7 69 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 KANTRA0A1W2PQU2 76 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 CDHR4A6H8M9 788 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 RNF222A6NCQ9 220 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 FAM86C2PA6NEL3 165 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 C5orf52A6NGY3 159 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 OR6C75A6NL08 312 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 DBX1A6NMT0 343 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 C1orf196B1AJZ1 125 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 ZNF879B4DU55 563 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 BLOC1S5-TXNDC5H3BN57 136 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 SURF4O15260 269 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 NUPL2O15504 423 aaKnown RBP6.2□□□□□ -1.42
USP28-207ENST00000538475 FLRT2O43155 660 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 FGF16O43320 207 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 GPRIN2O60269 458 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 SOCS5O75159 536 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 EIF3GO75821 320 aaKnown RBP eCLIP6.2□□□□□ -1.42
USP28-207ENST00000538475 NCR1O76036 304 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 SOX14O95416 240 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 C6orf47O95873 294 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 IFNA10P01566 189 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 WNT1P04628 370 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 EPHX1P07099 455 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 ZNF806P0C7X5 589 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 GKN3PP0CG01 181 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 CALCBP10092 127 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 ZNF8P17098 575 aaPredicted RBP6.2□□□□□ -1.42
USP28-207ENST00000538475 HLA-GP17693 338 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 TNFRSF1BP20333 461 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 XPAP23025 273 aaPredicted RBP6.2□□□□□ -1.42
USP28-207ENST00000538475 FPR3P25089 353 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 PTAFRP25105 342 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 FEN1P39748 380 aaKnown RBP6.2□□□□□ -1.42
USP28-207ENST00000538475 SLC6A11P48066 632 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 CENPAP49450 140 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 CSNK1EP49674 416 aaKnown RBP6.2□□□□□ -1.42
USP28-207ENST00000538475 CCR6P51684 374 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 ART1P52961 327 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 DGCR2P98153 550 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 TMEM115Q12893 351 aaPredicted RBP6.2□□□□□ -1.42
USP28-207ENST00000538475 SNTB1Q13884 538 aaKnown RBP6.2□□□□□ -1.42
USP28-207ENST00000538475 TRAM2Q15035 370 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 IRF4Q15306 451 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 KCNA10Q16322 511 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 SLC5A12Q1EHB4 618 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 GAB4Q2WGN9 574 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 ZNF311Q5JNZ3 666 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 TMEM255AQ5JRV8 349 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 CDCP2Q5VXM1 449 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 MED27Q6P2C8 311 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 PRSS55Q6UWB4 352 aaPredicted RBP6.2□□□□□ -1.42
USP28-207ENST00000538475 ANGPTL8Q6UXH0 198 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 ZNF813Q6ZN06 617 aa6.2□□□□□ -1.42
USP28-207ENST00000538475 Q6ZTK2 550 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms