RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 SDHAP31040 664 aa10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 WASP42768 502 aa10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 SFXN4Q6P4A7 337 aa10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 CLEC9AQ6UXN8 241 aa10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 ZNF546Q86UE3 836 aa10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 NPAS3Q8IXF0 933 aa10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 SIDT2Q8NBJ9 832 aaKnown RBP10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 ZNF671Q8TAW3 534 aa10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 HMGB4Q8WW32 186 aa10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 OR8D1Q8WZ84 308 aa10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 ELF4Q99607 663 aaPredicted RBP10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 GPR61Q9BZJ8 451 aa10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 SUV39H2Q9H5I1 410 aa10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 FGF20Q9NP95 211 aaPredicted RBP10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 GAR1Q9NY12 217 aaKnown RBP10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 SCML2Q9UQR0 700 aa10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 A0A1W2PRQ8 180 aa10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 ADAM10O14672 748 aa10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 PIP5K1CO60331 668 aa10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 CFIP05156 583 aa10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 ZNF44P15621 663 aa10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 GLP1RP43220 463 aa10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 CXADRP78310 365 aa10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 SHC2P98077 582 aa10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 KLF9Q13886 244 aaPredicted RBP10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 NHLRC1Q6VVB1 395 aa10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 BCDIN3DQ7Z5W3 292 aaKnown RBP10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 RBM18Q96H35 190 aaKnown RBP10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 ZNF582Q96NG8 517 aaPredicted RBP10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 SLC2A13Q96QE2 648 aa10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 PIGQQ9BRB3 760 aa10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 ZDHHC6Q9H6R6 413 aa10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 OBP2AQ9NY56 170 aa10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 KCTD3Q9Y597 815 aa10.13□□□□□ -0.79
CLSTN3-207ENST00000537408 F5P12259 2224 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 FADS1O60427 444 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 LILRB3O75022 631 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 RLN1P04808 185 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 C1GALT1C1LP0DN25 315 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 CPT2P23786 658 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 C21orf58P58505 322 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 SNRPD1P62314 119 aaKnown RBP10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 MELKQ14680 651 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 TSSK4Q6SA08 328 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 ZNF551Q7Z340 670 aaPredicted RBP10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 NT5C3BQ969T7 300 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 CXCL16Q9H2A7 254 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 PRDM6Q9NQX0 595 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 ZSCAN32Q9NX65 697 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 MRPL15Q9P015 296 aaKnown RBP10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 WNT16Q9UBV4 365 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 ANGPT4Q9Y264 503 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 ASF1AQ9Y294 204 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 SDK1Q7Z5N4 2213 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 CACNB4O00305 520 aaPredicted RBP10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 PRODHO43272 600 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 LRRTM2O43300 516 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 HOXB2P14652 356 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 NME1P15531 152 aaKnown RBP10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 NFYBP25208 207 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 MTNR1AP48039 350 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 SCARB2Q14108 478 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 TMEM255AQ5JRV8 349 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 ETV3LQ6ZN32 361 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 SLC30A8Q8IWU4 369 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 RFKQ969G6 155 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 TLNRD1Q9H1K6 362 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 HRASLSQ9HDD0 168 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 FAAHO00519 579 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 GSTZ1O43708 216 aaPredicted RBP10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 ATXN8OSP0DMR3 200 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 ZNF7P17097 686 aaPredicted RBP10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 MAGEB1P43366 347 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 XCR1P46094 333 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 RPP30P78346 268 aaKnown RBP10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 TIAL1Q01085 375 aaKnown RBP eCLIP10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 RBM39Q14498 530 aaKnown RBP10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 RSU1Q15404 277 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 SF1Q15637 639 aaKnown RBP10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 PGBD2Q6P3X8 592 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 LINGO4Q6UY18 593 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 CHST9Q7L1S5 443 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 GPRIN1Q7Z2K8 1008 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 DTD1Q8TEA8 209 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 EEF1AKMT1Q8WVE0 214 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 HSPA12BQ96MM6 686 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 RPS10P5Q9NQ39 176 aa10.12□□□□□ -0.79
CLSTN3-207ENST00000537408 PCDH7O60245 1069 aa10.11□□□□□ -0.79
CLSTN3-207ENST00000537408 C5AR1P21730 350 aa10.11□□□□□ -0.79
CLSTN3-207ENST00000537408 MVDP53602 400 aa10.11□□□□□ -0.79
CLSTN3-207ENST00000537408 NHLH2Q02577 135 aa10.11□□□□□ -0.79
CLSTN3-207ENST00000537408 NDUFA9Q16795 377 aa10.11□□□□□ -0.79
CLSTN3-207ENST00000537408 SYT14P1Q58G82 188 aa10.11□□□□□ -0.79
CLSTN3-207ENST00000537408 XKR4Q5GH76 650 aa10.11□□□□□ -0.79
CLSTN3-207ENST00000537408 ANXA8L1Q5VT79 327 aa10.11□□□□□ -0.79
CLSTN3-207ENST00000537408 GAREM2Q75VX8 874 aa10.11□□□□□ -0.79
CLSTN3-207ENST00000537408 ABHD13Q7L211 337 aa10.11□□□□□ -0.79
CLSTN3-207ENST00000537408 CHST14Q8NCH0 376 aa10.11□□□□□ -0.79
CLSTN3-207ENST00000537408 HUS1BQ8NHY5 278 aa10.11□□□□□ -0.79
CLSTN3-207ENST00000537408 SMIM4Q8WVI0 70 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms