RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 MRASO14807 208 aa13.5□□□□□ -0.25
CPSF1-208ENST00000532560 HNRNPRO43390 633 aaKnown RBP13.5□□□□□ -0.25
CPSF1-208ENST00000532560 CCDC22O60826 627 aa13.5□□□□□ -0.25
CPSF1-208ENST00000532560 NPPAP01160 153 aa13.5□□□□□ -0.25
CPSF1-208ENST00000532560 PABPC4LP0CB38 370 aaKnown RBP13.5□□□□□ -0.25
CPSF1-208ENST00000532560 UQCRBP14927 111 aa13.5□□□□□ -0.25
CPSF1-208ENST00000532560 RYKP34925 604 aa13.5□□□□□ -0.25
CPSF1-208ENST00000532560 SFTPDP35247 375 aa13.5□□□□□ -0.25
CPSF1-208ENST00000532560 ASCL1P50553 236 aa13.5□□□□□ -0.25
CPSF1-208ENST00000532560 MTPNP58546 118 aa13.5□□□□□ -0.25
CPSF1-208ENST00000532560 EPS8Q12929 822 aa13.5□□□□□ -0.25
CPSF1-208ENST00000532560 CYLC2Q14093 348 aaPredicted RBP13.5□□□□□ -0.25
CPSF1-208ENST00000532560 SCARB2Q14108 478 aa13.5□□□□□ -0.25
CPSF1-208ENST00000532560 SELPLGQ14242 412 aa13.5□□□□□ -0.25
CPSF1-208ENST00000532560 ADRM1Q16186 407 aa13.5□□□□□ -0.25
CPSF1-208ENST00000532560 SGCBQ16585 318 aa13.5□□□□□ -0.25
CPSF1-208ENST00000532560 EEF1A1P5Q5VTE0 462 aa13.5□□□□□ -0.25
CPSF1-208ENST00000532560 HBMQ6B0K9 141 aa13.5□□□□□ -0.25
CPSF1-208ENST00000532560 REP15Q6BDI9 236 aa13.5□□□□□ -0.25
CPSF1-208ENST00000532560 PLEKHM3Q6ZWE6 761 aa13.5□□□□□ -0.25
CPSF1-208ENST00000532560 GRINAQ7Z429 371 aa13.5□□□□□ -0.25
CPSF1-208ENST00000532560 NET1Q7Z628 596 aaPredicted RBP13.5□□□□□ -0.25
CPSF1-208ENST00000532560 SNX32Q86XE0 403 aa13.5□□□□□ -0.25
CPSF1-208ENST00000532560 GCNT2Q8N0V5 402 aa13.5□□□□□ -0.25
CPSF1-208ENST00000532560 ARHGAP24Q8N264 748 aa13.5□□□□□ -0.25
CPSF1-208ENST00000532560 ZNF563Q8TA94 476 aa13.5□□□□□ -0.25
CPSF1-208ENST00000532560 INTS12Q96CB8 462 aaKnown RBP13.5□□□□□ -0.25
CPSF1-208ENST00000532560 CCDC106Q9BWC9 280 aa13.5□□□□□ -0.25
CPSF1-208ENST00000532560 SPATA9Q9BWV2 254 aa13.5□□□□□ -0.25
CPSF1-208ENST00000532560 ENKD1Q9H0I2 346 aa13.5□□□□□ -0.25
CPSF1-208ENST00000532560 ARMC7Q9H6L4 198 aa13.5□□□□□ -0.25
CPSF1-208ENST00000532560 KAT8Q9H7Z6 458 aaKnown RBP13.5□□□□□ -0.25
CPSF1-208ENST00000532560 RNF122Q9H9V4 155 aa13.5□□□□□ -0.25
CPSF1-208ENST00000532560 MCTS1Q9ULC4 181 aaKnown RBP13.5□□□□□ -0.25
CPSF1-208ENST00000532560 HCFC1P51610 2035 aa13.5□□□□□ -0.25
CPSF1-208ENST00000532560 INTS1Q8N201 2190 aaKnown RBP13.49□□□□□ -0.25
CPSF1-208ENST00000532560 MED12LQ86YW9 2145 aa13.49□□□□□ -0.25
CPSF1-208ENST00000532560 A0A1W2PNV4 684 aa13.49□□□□□ -0.25
CPSF1-208ENST00000532560 AP3D1O14617 1153 aa13.49□□□□□ -0.25
CPSF1-208ENST00000532560 OPN1LWP04000 364 aa13.49□□□□□ -0.25
CPSF1-208ENST00000532560 COX6B1P14854 86 aa13.49□□□□□ -0.25
CPSF1-208ENST00000532560 CALB2P22676 271 aa13.49□□□□□ -0.25
CPSF1-208ENST00000532560 SLC6A2P23975 617 aa13.49□□□□□ -0.25
CPSF1-208ENST00000532560 APOBEC1P41238 236 aaKnown RBP13.49□□□□□ -0.25
CPSF1-208ENST00000532560 HTR3AP46098 478 aa13.49□□□□□ -0.25
CPSF1-208ENST00000532560 RBBP4Q09028 425 aa13.49□□□□□ -0.25
CPSF1-208ENST00000532560 MERTKQ12866 999 aa13.49□□□□□ -0.25
CPSF1-208ENST00000532560 FOXF2Q12947 444 aa13.49□□□□□ -0.25
CPSF1-208ENST00000532560 CAPRIN1Q14444 709 aaKnown RBP13.49□□□□□ -0.25
CPSF1-208ENST00000532560 CYP51A1Q16850 503 aa13.49□□□□□ -0.25
CPSF1-208ENST00000532560 TMEM176BQ3YBM2 270 aaPredicted RBP13.49□□□□□ -0.25
CPSF1-208ENST00000532560 FBXL19-AS1Q494R0 122 aa13.49□□□□□ -0.25
CPSF1-208ENST00000532560 MMEL1Q495T6 779 aa13.49□□□□□ -0.25
CPSF1-208ENST00000532560 ZNF311Q5JNZ3 666 aa13.49□□□□□ -0.25
CPSF1-208ENST00000532560 KRT73Q86Y46 540 aa13.49□□□□□ -0.25
CPSF1-208ENST00000532560 PTOV1Q86YD1 416 aa13.49□□□□□ -0.25
CPSF1-208ENST00000532560 PCYOX1LQ8NBM8 494 aa13.49□□□□□ -0.25
CPSF1-208ENST00000532560 C11orf65Q8NCR3 313 aa13.49□□□□□ -0.25
CPSF1-208ENST00000532560 HIPK4Q8NE63 616 aa13.49□□□□□ -0.25
CPSF1-208ENST00000532560 OR8J3Q8NGG0 315 aa13.49□□□□□ -0.25
CPSF1-208ENST00000532560 SLC25A43Q8WUT9 341 aaPredicted RBP13.49□□□□□ -0.25
CPSF1-208ENST00000532560 SLC35B4Q969S0 331 aa13.49□□□□□ -0.25
CPSF1-208ENST00000532560 CPNE4Q96A23 557 aaPredicted RBP13.49□□□□□ -0.25
CPSF1-208ENST00000532560 SPOCK3Q9BQ16 436 aa13.49□□□□□ -0.25
CPSF1-208ENST00000532560 TRIM8Q9BZR9 551 aa13.49□□□□□ -0.25
CPSF1-208ENST00000532560 MMADHCQ9H3L0 296 aaPredicted RBP13.49□□□□□ -0.25
CPSF1-208ENST00000532560 YY1AP1Q9H869 796 aa13.49□□□□□ -0.25
CPSF1-208ENST00000532560 COQ10BQ9H8M1 238 aa13.49□□□□□ -0.25
CPSF1-208ENST00000532560 SERINC1Q9NRX5 453 aa13.49□□□□□ -0.25
CPSF1-208ENST00000532560 RLIMQ9NVW2 624 aa13.49□□□□□ -0.25
CPSF1-208ENST00000532560 JKAMPQ9P055 326 aa13.49□□□□□ -0.25
CPSF1-208ENST00000532560 ARMCX1Q9P291 453 aa13.49□□□□□ -0.25
CPSF1-208ENST00000532560 ZNF232Q9UNY5 417 aa13.49□□□□□ -0.25
CPSF1-208ENST00000532560 ANGPT4Q9Y264 503 aa13.49□□□□□ -0.25
CPSF1-208ENST00000532560 CHST2Q9Y4C5 530 aa13.49□□□□□ -0.25
CPSF1-208ENST00000532560 CXCL13O43927 109 aa13.48□□□□□ -0.25
CPSF1-208ENST00000532560 TNFSF13O75888 250 aa13.48□□□□□ -0.25
CPSF1-208ENST00000532560 AQP8O94778 261 aa13.48□□□□□ -0.25
CPSF1-208ENST00000532560 SYNGR4O95473 234 aa13.48□□□□□ -0.25
CPSF1-208ENST00000532560 SLC7A1P30825 629 aa13.48□□□□□ -0.25
CPSF1-208ENST00000532560 PRKAR1BP31321 381 aa13.48□□□□□ -0.25
CPSF1-208ENST00000532560 IDH2P48735 452 aaKnown RBP13.48□□□□□ -0.25
CPSF1-208ENST00000532560 GUSBP1Q15486 140 aa13.48□□□□□ -0.25
CPSF1-208ENST00000532560 ZNF239Q16600 458 aaKnown RBP13.48□□□□□ -0.25
CPSF1-208ENST00000532560 NANOGP8Q6NSW7 305 aa13.48□□□□□ -0.25
CPSF1-208ENST00000532560 DHRS4L2Q6PKH6 230 aa13.48□□□□□ -0.25
CPSF1-208ENST00000532560 ZNF550Q7Z398 422 aa13.48□□□□□ -0.25
CPSF1-208ENST00000532560 SERPINA11Q86U17 422 aa13.48□□□□□ -0.25
CPSF1-208ENST00000532560 CLIP4Q8N3C7 705 aa13.48□□□□□ -0.25
CPSF1-208ENST00000532560 RP9Q8TA86 221 aaKnown RBP13.48□□□□□ -0.25
CPSF1-208ENST00000532560 OSTF1Q92882 214 aa13.48□□□□□ -0.25
CPSF1-208ENST00000532560 MARVELD3Q96A59 401 aa13.48□□□□□ -0.25
CPSF1-208ENST00000532560 LRRC58Q96CX6 371 aa13.48□□□□□ -0.25
CPSF1-208ENST00000532560 NSL1Q96IY1 281 aa13.48□□□□□ -0.25
CPSF1-208ENST00000532560 SH3GL1Q99961 368 aa13.48□□□□□ -0.25
CPSF1-208ENST00000532560 SLC39A3Q9BRY0 314 aa13.48□□□□□ -0.25
CPSF1-208ENST00000532560 SPATA5L1Q9BVQ7 753 aa13.48□□□□□ -0.25
CPSF1-208ENST00000532560 PIGMQ9H3S5 423 aa13.48□□□□□ -0.25
CPSF1-208ENST00000532560 NANOGQ9H9S0 305 aa13.48□□□□□ -0.25
CPSF1-208ENST00000532560 TIGARQ9NQ88 270 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms