RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 ZNF117Q03924 483 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 ZP4Q12836 540 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 ILF2Q12905 390 aaKnown RBP7.1□□□□□ -1.27
CD44-232ENST00000531118 IFT88Q13099 833 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 FASTKD3Q14CZ7 662 aaKnown RBP7.1□□□□□ -1.27
CD44-232ENST00000531118 ADRM1Q16186 407 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 PFKFB4Q16877 469 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 ZBTB37Q5TC79 503 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 FAM219BQ5XKK7 198 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 KLHL24Q6TFL4 600 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 IKBIPQ70UQ0 350 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 CMC1Q7Z7K0 106 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 ZAR1Q86SH2 424 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 PDIK1LQ8N165 341 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 ZCCHC24Q8N2G6 241 aaKnown RBP7.1□□□□□ -1.27
CD44-232ENST00000531118 OR2L13Q8N349 312 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 SIGLECL1Q8N7X8 197 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 ATP6V1C2Q8NEY4 427 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 GRK7Q8WTQ7 553 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 PIK3R3Q92569 461 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 LRRC39Q96DD0 335 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 C1orf147Q96MC9 270 aaPredicted RBP7.1□□□□□ -1.27
CD44-232ENST00000531118 SLC38A2Q96QD8 506 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 RBBP8Q99708 897 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 BAG1Q99933 345 aaPredicted RBP7.1□□□□□ -1.27
CD44-232ENST00000531118 KCNS3Q9BQ31 491 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 KATNB1Q9BVA0 655 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 RACGAP1Q9H0H5 632 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 C3orf14Q9HBI5 128 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 NMRAL1Q9HBL8 299 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 SLC35C2Q9NQQ7 365 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 TREM2Q9NZC2 230 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 ZDHHC2Q9UIJ5 367 aa7.1□□□□□ -1.27
CD44-232ENST00000531118 C19orf53Q9UNZ5 99 aaPredicted RBP7.1□□□□□ -1.27
CD44-232ENST00000531118 NOSIPQ9Y314 301 aaKnown RBP7.1□□□□□ -1.27
CD44-232ENST00000531118 SACSQ9NZJ4 4579 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 A0A0G2JMP0 313 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 A0A0X1KG70 313 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 A0A1W2PQD3 144 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 ZNF716A6NP11 495 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 M0QZ24 198 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 WNT9BO14905 357 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 PCDH7O60245 1069 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 BPNT1O95861 308 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 WNT11O96014 354 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 JUNP05412 331 aaKnown RBP7.09□□□□□ -1.27
CD44-232ENST00000531118 RNASE1P07998 156 aaKnown RBP7.09□□□□□ -1.27
CD44-232ENST00000531118 PRKCAP17252 672 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 GABRA3P34903 492 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 FNTAP49354 379 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 CCNG1P51959 295 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 NCBP2P52298 156 aaKnown RBP eCLIP7.09□□□□□ -1.27
CD44-232ENST00000531118 ALDH18A1P54886 795 aaKnown RBP7.09□□□□□ -1.27
CD44-232ENST00000531118 PPP1R7Q15435 360 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 GGTA1PQ4G0N0 100 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 SGO1Q5FBB7 561 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 C3orf33Q6P1S2 294 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 CASP12Q6UXS9 341 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 DOK3Q7L591 496 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 CARM1Q86X55 608 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 CDK20Q8IZL9 346 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 ZNF527Q8NB42 609 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 OR4M2Q8NGB6 313 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 OR4C3Q8NH37 302 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 FBXO30Q8TB52 745 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 GATAD2BQ8WXI9 593 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 TAF15Q92804 592 aaKnown RBP eCLIP7.09□□□□□ -1.27
CD44-232ENST00000531118 LRRC58Q96CX6 371 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 BBS4Q96RK4 519 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 CCT8L2Q96SF2 557 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 SHCBP1LQ9BZQ2 653 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 TPK1Q9H3S4 243 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 ELOVL6Q9H5J4 265 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 NOL11Q9H8H0 719 aaKnown RBP7.09□□□□□ -1.27
CD44-232ENST00000531118 SLC52A3Q9NQ40 469 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 EQTNQ9NQ60 294 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 FARSBQ9NSD9 589 aaKnown RBP7.09□□□□□ -1.27
CD44-232ENST00000531118 PDP1Q9P0J1 537 aaPredicted RBP7.09□□□□□ -1.27
CD44-232ENST00000531118 RNF14Q9UBS8 474 aa7.09□□□□□ -1.27
CD44-232ENST00000531118 TTC36A6NLP5 189 aa7.08□□□□□ -1.28
CD44-232ENST00000531118 CXorf49A8MYA2 514 aaPredicted RBP7.08□□□□□ -1.28
CD44-232ENST00000531118 MYO1GB0I1T2 1018 aa7.08□□□□□ -1.28
CD44-232ENST00000531118 J3QLI3 93 aa7.08□□□□□ -1.28
CD44-232ENST00000531118 SCDO00767 359 aa7.08□□□□□ -1.28
CD44-232ENST00000531118 NKX2-2O95096 273 aa7.08□□□□□ -1.28
CD44-232ENST00000531118 NUDT14O95848 222 aa7.08□□□□□ -1.28
CD44-232ENST00000531118 PDYNP01213 254 aa7.08□□□□□ -1.28
CD44-232ENST00000531118 CALCRP30988 508 aa7.08□□□□□ -1.28
CD44-232ENST00000531118 NTSP30990 170 aa7.08□□□□□ -1.28
CD44-232ENST00000531118 NTF4P34130 210 aa7.08□□□□□ -1.28
CD44-232ENST00000531118 MPIP34949 423 aa7.08□□□□□ -1.28
CD44-232ENST00000531118 SUMO3P55854 103 aaPredicted RBP7.08□□□□□ -1.28
CD44-232ENST00000531118 PRPS1P60891 318 aa7.08□□□□□ -1.28
CD44-232ENST00000531118 LMO4P61968 165 aa7.08□□□□□ -1.28
CD44-232ENST00000531118 SRSF4Q08170 494 aaKnown RBP7.08□□□□□ -1.28
CD44-232ENST00000531118 PDK3Q15120 406 aa7.08□□□□□ -1.28
CD44-232ENST00000531118 TRADDQ15628 312 aa7.08□□□□□ -1.28
CD44-232ENST00000531118 TOMM34Q15785 309 aaPredicted RBP7.08□□□□□ -1.28
CD44-232ENST00000531118 ELFN2Q5R3F8 820 aa7.08□□□□□ -1.28
CD44-232ENST00000531118 C1QTNF12Q5T7M4 302 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms