RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 MPPE1Q53F39 396 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 BRMS1LQ5PSV4 323 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 CCDC122Q5T0U0 273 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 DCAF12Q5T6F0 453 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 LIPJQ5W064 366 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 ETFRF1Q6IPR1 90 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 DCUN1D2Q6PH85 259 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 B3GLCTQ6Y288 498 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 STRADAQ7RTN6 431 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 VPS36Q86VN1 386 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 CARM1Q86X55 608 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 ZNF683Q8IZ20 524 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 GVQW1Q8N7I0 195 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 POM121L12Q8N7R1 296 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 ZNF781Q8N8C0 355 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 ATP6V0D2Q8N8Y2 350 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 SIDT2Q8NBJ9 832 aaKnown RBP3.1□□□□□ -1.91
CD44-219ENST00000525685 OR8K1Q8NGG5 319 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 OR4Q3Q8NH05 313 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 OR4L1Q8NH43 312 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 FBXO25Q8TCJ0 367 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 DDI1Q8WTU0 396 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 SSC4DQ8WTU2 575 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 GIMAP1Q8WWP7 306 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 GLYATL1Q969I3 302 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 NTAN1Q96AB6 310 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 NABP1Q96AH0 204 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 CABS1Q96KC9 395 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 BTN2A3PQ96KV6 586 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 RAB40CQ96S21 281 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 PEBP4Q96S96 227 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 CHP1Q99653 195 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 SPAG8Q99932 426 aaPredicted RBP3.1□□□□□ -1.91
CD44-219ENST00000525685 PYGO2Q9BRQ0 406 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 ACAT2Q9BWD1 397 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 SLC26A1Q9H2B4 701 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 NT5DC2Q9H857 520 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 NHEJ1Q9H9Q4 299 aaPredicted RBP3.1□□□□□ -1.91
CD44-219ENST00000525685 MID1IP1Q9NPA3 183 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 ZDHHC4Q9NPG8 344 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 PRMT8Q9NR22 394 aaPredicted RBP3.1□□□□□ -1.91
CD44-219ENST00000525685 DDX28Q9NUL7 540 aaKnown RBP3.1□□□□□ -1.91
CD44-219ENST00000525685 TAS2R16Q9NYV7 291 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 NDUFA13Q9P0J0 144 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 DEC1Q9P2X7 70 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 ZNF346Q9UL40 294 aaKnown RBP3.1□□□□□ -1.91
CD44-219ENST00000525685 VANGL2Q9ULK5 521 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 RABL2BQ9UNT1 228 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 NEU3Q9UQ49 428 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 FOXA2Q9Y261 457 aaPredicted RBP3.1□□□□□ -1.91
CD44-219ENST00000525685 IKBKGQ9Y6K9 419 aa3.1□□□□□ -1.91
CD44-219ENST00000525685 UNC80Q8N2C7 3258 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 IGLV3-10A0A075B6K4 115 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 BCLAF3A2AJT9 711 aaKnown RBP3.09□□□□□ -1.91
CD44-219ENST00000525685 C5orf51A6NDU8 294 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 RPL37AP8A6NKH3 93 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 E9PAM4 449 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 SGK1O00141 431 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 TXNL1O43396 289 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 SH3BGRLO75368 114 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 KLF8O95600 359 aaPredicted RBP3.09□□□□□ -1.91
CD44-219ENST00000525685 HOXD4P09016 255 aaPredicted RBP3.09□□□□□ -1.91
CD44-219ENST00000525685 CT45A8P0DMV1 189 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 CT45A9P0DMV2 189 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 AREGP15514 252 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 ETV5P41161 510 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 CSKP41240 450 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 PTGER3P43115 390 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 TNFRSF4P43489 277 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 NUMBP49757 651 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 SLC7A2P52569 658 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 ADARP55265 1226 aaKnown RBP3.09□□□□□ -1.91
CD44-219ENST00000525685 CDH4P55283 916 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 RPL27P61353 136 aaKnown RBP3.09□□□□□ -1.91
CD44-219ENST00000525685 LMO4P61968 165 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 HERV-K104P63124 156 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 SLC25A11Q02978 314 aaKnown RBP3.09□□□□□ -1.91
CD44-219ENST00000525685 CBX3Q13185 183 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 PDE7AQ13946 482 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 CRMP1Q14194 572 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 GK2Q14410 553 aaPredicted RBP3.09□□□□□ -1.91
CD44-219ENST00000525685 DMC1Q14565 340 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 MEF2DQ14814 521 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 OR1C1Q15619 314 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 POM121L1PQ3SYA9 428 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 CT45A2Q5DJT8 189 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 RABGAP1LQ5R372 815 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 C9orf66Q5T8R8 295 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 SEL1L3Q68CR1 1132 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 TMEM215Q68D42 235 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 NUFIP2Q7Z417 695 aaKnown RBP3.09□□□□□ -1.91
CD44-219ENST00000525685 LRRC49Q8IUZ0 686 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 PYROXD2Q8N2H3 581 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 ALLCQ8N6M5 410 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 ARL6IP6Q8N6S5 226 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 C17orf47Q8NEP4 570 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 BEST4Q8NFU0 473 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 OR52K2Q8NGK3 314 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 CCDC26Q8TAB7 109 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 ZNF564Q8TBZ8 553 aaPredicted RBP3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms