RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 HTR3AP46098 478 aa13.67□□□□□ -0.22
NUP54-217ENST00000514987 SLC16A1P53985 500 aa13.67□□□□□ -0.22
NUP54-217ENST00000514987 CRYZQ08257 329 aaKnown RBP13.67□□□□□ -0.22
NUP54-217ENST00000514987 CRMP1Q14194 572 aa13.67□□□□□ -0.22
NUP54-217ENST00000514987 TRIQKQ629K1 86 aa13.67□□□□□ -0.22
NUP54-217ENST00000514987 CNIH2Q6PI25 160 aa13.67□□□□□ -0.22
NUP54-217ENST00000514987 ZC3H14Q6PJT7 736 aaKnown RBP13.67□□□□□ -0.22
NUP54-217ENST00000514987 NPSR1Q6W5P4 371 aa13.67□□□□□ -0.22
NUP54-217ENST00000514987 DPY19L2P2Q6ZN68 376 aa13.67□□□□□ -0.22
NUP54-217ENST00000514987 MED25Q71SY5 747 aa13.67□□□□□ -0.22
NUP54-217ENST00000514987 SLITRK4Q8IW52 837 aa13.67□□□□□ -0.22
NUP54-217ENST00000514987 TEX19Q8NA77 164 aa13.67□□□□□ -0.22
NUP54-217ENST00000514987 C19orf18Q8NEA5 215 aa13.67□□□□□ -0.22
NUP54-217ENST00000514987 SMPDL3BQ92485 455 aa13.67□□□□□ -0.22
NUP54-217ENST00000514987 TIMP4Q99727 224 aa13.67□□□□□ -0.22
NUP54-217ENST00000514987 HCAR1Q9BXC0 346 aa13.67□□□□□ -0.22
NUP54-217ENST00000514987 RBCK1Q9BYM8 510 aa13.67□□□□□ -0.22
NUP54-217ENST00000514987 PPP1R3EQ9H7J1 279 aa13.67□□□□□ -0.22
NUP54-217ENST00000514987 PDE7BQ9NP56 450 aa13.67□□□□□ -0.22
NUP54-217ENST00000514987 INIPQ9NRY2 104 aa13.67□□□□□ -0.22
NUP54-217ENST00000514987 A0A087WUJ7 227 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 TGFBR3LH3BV60 316 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 CT45A8P0DMV1 189 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 CT45A9P0DMV2 189 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 ADH7P40394 386 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 GABRA4P48169 554 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 NRG3P56975 720 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 ACTA2P62736 377 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 ACTG2P63267 376 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 GGTLC2Q14390 218 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 GRM7Q14831 915 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 CT45A2Q5DJT8 189 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 HBMQ6B0K9 141 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 KIRREL2Q6UWL6 708 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 NCCRP1Q6ZVX7 275 aaPredicted RBP13.66□□□□□ -0.22
NUP54-217ENST00000514987 VASH1Q7L8A9 365 aaPredicted RBP13.66□□□□□ -0.22
NUP54-217ENST00000514987 C17orf82Q86X59 251 aaPredicted RBP13.66□□□□□ -0.22
NUP54-217ENST00000514987 SHISA5Q8N114 240 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 CARFQ8N187 725 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 CADM2Q8N3J6 435 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 FRMD1Q8N878 549 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 BCORP1Q8N888 145 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 ZNF527Q8NB42 609 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 OR4N2Q8NGD1 307 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 C16orf52Q8NHV5 167 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 MMABQ96EY8 250 aaPredicted RBP13.66□□□□□ -0.22
NUP54-217ENST00000514987 SPACA7Q96KW9 195 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 ERMAPQ96PL5 475 aaPredicted RBP13.66□□□□□ -0.22
NUP54-217ENST00000514987 UBL7Q96S82 380 aaPredicted RBP13.66□□□□□ -0.22
NUP54-217ENST00000514987 CHRNA9Q9UGM1 479 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 MMACHCQ9Y4U1 282 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 C5orf42Q9H799 3197 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 METTL12A8MUP2 240 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 LRRTM2O43300 516 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 HPGDSO60760 199 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 REM1O75628 298 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 CD1AP06126 327 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 CTSBP07858 339 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 OR2T7P0C7T2 308 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 PNMTP11086 282 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 SLC2A2P11168 524 aaPredicted RBP13.66□□□□□ -0.22
NUP54-217ENST00000514987 LCN1P31025 176 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 FNTBP49356 437 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 EPHA4P54764 986 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 FHL1Q13642 323 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 KLHL26Q53HC5 615 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 SLC35D3Q5M8T2 416 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 RDH10Q8IZV5 341 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 SYS1Q8N2H4 156 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 ZNF615Q8N8J6 731 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 SCAIQ8N9R8 606 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 CADM4Q8NFZ8 388 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 OR2T27Q8NH04 317 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 OR51Q1Q8NH59 317 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 LMX1AQ8TE12 382 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 ZDHHC12Q96GR4 267 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 ZC3HAV1LQ96H79 300 aaKnown RBP13.66□□□□□ -0.22
NUP54-217ENST00000514987 TBX5Q99593 518 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 RNF32Q9H0A6 362 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 ZNF221Q9UK13 617 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 MRTO4Q9UKD2 239 aaKnown RBP13.66□□□□□ -0.22
NUP54-217ENST00000514987 ERVK-19Q9WJR5 959 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 ZNF337Q9Y3M9 751 aa13.66□□□□□ -0.22
NUP54-217ENST00000514987 A0A1W2PR77 199 aa13.65□□□□□ -0.22
NUP54-217ENST00000514987 ZC3H12DA2A288 527 aaKnown RBP13.65□□□□□ -0.22
NUP54-217ENST00000514987 ARPC3O15145 178 aa13.65□□□□□ -0.22
NUP54-217ENST00000514987 IFNA16P05015 189 aa13.65□□□□□ -0.22
NUP54-217ENST00000514987 NGFRP08138 427 aa13.65□□□□□ -0.22
NUP54-217ENST00000514987 PRKAR1AP10644 381 aa13.65□□□□□ -0.22
NUP54-217ENST00000514987 POU3F3P20264 500 aaPredicted RBP13.65□□□□□ -0.22
NUP54-217ENST00000514987 PGDP52209 483 aa13.65□□□□□ -0.22
NUP54-217ENST00000514987 CAV3P56539 151 aa13.65□□□□□ -0.22
NUP54-217ENST00000514987 PRPS1P60891 318 aa13.65□□□□□ -0.22
NUP54-217ENST00000514987 BTG2P78543 158 aa13.65□□□□□ -0.22
NUP54-217ENST00000514987 DAB2P98082 770 aa13.65□□□□□ -0.22
NUP54-217ENST00000514987 ZNF85Q03923 595 aa13.65□□□□□ -0.22
NUP54-217ENST00000514987 HSF2Q03933 536 aa13.65□□□□□ -0.22
NUP54-217ENST00000514987 SMAD4Q13485 552 aaKnown RBP13.65□□□□□ -0.22
NUP54-217ENST00000514987 TAB1Q15750 504 aa13.65□□□□□ -0.22
NUP54-217ENST00000514987 KCNJ8Q15842 424 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms