RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 ZNF417Q8TAU3 575 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 SPATA6Q9NWH7 488 aaPredicted RBP11.82□□□□□ -0.52
USP53-209ENST00000514665 RARRES3Q9UL19 164 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 RPH3AQ9Y2J0 694 aaPredicted RBP11.82□□□□□ -0.52
USP53-209ENST00000514665 UGT2A1Q9Y4X1 527 aa11.82□□□□□ -0.52
USP53-209ENST00000514665 KIR2DS5A0A0G2JLQ3 304 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 A0A0G2JNG1 304 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 A0A1B0GV50 99 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 KIR2DS3K7RE56 304 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 YY2O15391 372 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 RFPL3O75679 317 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 ZNF43P17038 809 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 VASPP50552 380 aaPredicted RBP11.81□□□□□ -0.52
USP53-209ENST00000514665 ZNF84P51523 738 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 HSD11B2P80365 405 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 NFATC4Q14934 902 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 KIR2DS5Q14953 304 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 POU4F3Q15319 338 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 ATAD3CQ5T2N8 411 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 GALNT6Q8NCL4 622 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 OR5L2Q8NGL0 311 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 ELP4Q96EB1 424 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 ZNF304Q9HCX3 659 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 NUBP2Q9Y5Y2 271 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 MCM3APO60318 1980 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.81□□□□□ -0.52
USP53-209ENST00000514665 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.81□□□□□ -0.52
USP53-209ENST00000514665 ZNF850A8MQ14 1090 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 FAM155AB1AL88 458 aaPredicted RBP11.81□□□□□ -0.52
USP53-209ENST00000514665 ITGBL1O95965 494 aaPredicted RBP11.81□□□□□ -0.52
USP53-209ENST00000514665 EGFP01133 1207 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 TMEM225BP0DP42 221 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 HLA-DMAP28067 261 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 TEAD1P28347 426 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 GNRHRP30968 328 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 BCL6P41182 706 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 REEP5Q00765 189 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 NKG7Q16617 165 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 AWAT2Q6E213 333 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 BHLHA9Q7RTU4 235 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 P4HA3Q7Z4N8 544 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 BOLLQ8N9W6 283 aaKnown RBP11.81□□□□□ -0.52
USP53-209ENST00000514665 ADAMTS18Q8TE60 1221 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 RBM24Q9BX46 236 aaKnown RBP11.81□□□□□ -0.52
USP53-209ENST00000514665 ZDHHC5Q9C0B5 715 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 C11orf54Q9H0W9 315 aaPredicted RBP11.81□□□□□ -0.52
USP53-209ENST00000514665 FBRSQ9HAH7 460 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 MEGF11A6BM72 1044 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 WASHC1A8K0Z3 465 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 H3BNC9 293 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 TMPRSS11DO60235 418 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 FZD7O75084 574 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 SC5DO75845 299 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 SYPP08247 313 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 GLO1Q04760 184 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 SLC35D2Q76EJ3 337 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 PRICKLE2Q7Z3G6 844 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 NKAIN4Q8IVV8 208 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 OR4C15Q8NGM1 316 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 SLC22A8Q8TCC7 542 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 SPPL3Q8TCT6 385 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 TBC1D20Q96BZ9 403 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 NECTIN4Q96NY8 510 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 UBQLN3Q9H347 655 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 FKBP14Q9NWM8 211 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 CBLCQ9ULV8 474 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 DIMT1Q9UNQ2 313 aaKnown RBP11.81□□□□□ -0.52
USP53-209ENST00000514665 KDM4EB2RXH2 506 aaPredicted RBP11.81□□□□□ -0.52
USP53-209ENST00000514665 PRRT4C9JH25 899 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 PHYHO14832 338 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 DRD1P21728 446 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 TNFRSF17Q02223 184 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 TMEM150AQ86TG1 271 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 COMMD7Q86VX2 200 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 RIMKLAQ8IXN7 391 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 MFSD9Q8NBP5 474 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 BRIX1Q8TDN6 353 aaKnown RBP11.81□□□□□ -0.52
USP53-209ENST00000514665 ADAMTS14Q8WXS8 1223 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 CPNE2Q96FN4 548 aaPredicted RBP11.81□□□□□ -0.52
USP53-209ENST00000514665 PDXPQ96GD0 296 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 SLA2Q9H6Q3 261 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 C8orf33Q9H7E9 229 aaPredicted RBP11.81□□□□□ -0.52
USP53-209ENST00000514665 SLC6A13Q9NSD5 602 aa11.81□□□□□ -0.52
USP53-209ENST00000514665 RBFOX1Q9NWB1 397 aaKnown RBP11.81□□□□□ -0.52
USP53-209ENST00000514665 RFXAPO00287 272 aa11.8□□□□□ -0.52
USP53-209ENST00000514665 CPNE6O95741 557 aa11.8□□□□□ -0.52
USP53-209ENST00000514665 KNG1P01042 644 aa11.8□□□□□ -0.52
USP53-209ENST00000514665 DCNP07585 359 aaKnown RBP11.8□□□□□ -0.52
USP53-209ENST00000514665 JMJD7P0C870 316 aa11.8□□□□□ -0.52
USP53-209ENST00000514665 UGT2B7P16662 529 aa11.8□□□□□ -0.52
USP53-209ENST00000514665 NMNAT3Q96T66 252 aa11.8□□□□□ -0.52
USP53-209ENST00000514665 MFFQ9GZY8 342 aa11.8□□□□□ -0.52
USP53-209ENST00000514665 EPHX3Q9H6B9 360 aa11.8□□□□□ -0.52
USP53-209ENST00000514665 LDAHQ9H6V9 325 aa11.8□□□□□ -0.52
USP53-209ENST00000514665 ATP13A2Q9NQ11 1180 aa11.8□□□□□ -0.52
USP53-209ENST00000514665 MBNL1Q9NR56 388 aaKnown RBP11.8□□□□□ -0.52
USP53-209ENST00000514665 FTSJ1Q9UET6 329 aa11.8□□□□□ -0.52
USP53-209ENST00000514665 CACNA1IQ9P0X4 2223 aa11.8□□□□□ -0.52
USP53-209ENST00000514665 A0A087WUU8 490 aa11.8□□□□□ -0.52
USP53-209ENST00000514665 A0A1B0GWA3 101 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms