RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 EMCNQ9ULC0 261 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 DAPP1Q9UN19 280 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 EIF3LQ9Y262 564 aaKnown RBP7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 DOPEY1Q5JWR5 2465 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 H3BNX3 289 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 TGFBR3LH3BV60 316 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 GPR171O14626 319 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 ITGA10O75578 1167 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 NUDT14O95848 222 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 HOXB1P14653 301 aaPredicted RBP7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 FPR3P25089 353 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 EPHA3P29320 983 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 MPIP34949 423 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 GBX2P52951 348 aaPredicted RBP7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 RPS26P62854 115 aaKnown RBP7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 CDKL1Q00532 357 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 FLI1Q01543 452 aaPredicted RBP7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 GLO1Q04760 184 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 RAB39AQ14964 217 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 C1QL3Q5VWW1 255 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 MRPL14Q6P1L8 145 aaKnown RBP7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 CRLF3Q8IUI8 442 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 DPP10Q8N608 796 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 PDPRQ8NCN5 879 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 GRHL3Q8TE85 626 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 SEC14L1Q92503 715 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 DIO2Q92813 273 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 BSCL2Q96G97 398 aaPredicted RBP7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 SENP5Q96HI0 755 aaPredicted RBP7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 SH3YL1Q96HL8 342 aaPredicted RBP7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 ADAD1Q96M93 576 aaKnown RBP7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 NUAK2Q9H093 628 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 IL1RL2Q9HB29 575 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 ADA2Q9NZK5 511 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 ZIM2Q9NZV7 527 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 VPS29Q9UBQ0 182 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 GRHPRQ9UBQ7 328 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 RPS6KA6Q9UK32 745 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 AURKCQ9UQB9 309 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 CADP27708 2225 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 CELSR2Q9HCU4 2923 aa7.28□□□□□ -1.24
LIMCH1-219ENST00000514096 MANBAO00462 879 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 PNPP00491 289 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 S100PP25815 95 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 TRAF3Q13114 568 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 AIMP2Q13155 320 aaKnown RBP7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 UBAP2LQ14157 1087 aaKnown RBP7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 FGFBP1Q14512 234 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 SPCS2Q15005 226 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 RBMS2Q15434 407 aaKnown RBP7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 UGT8Q16880 541 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 FLYWCH1Q4VC44 716 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 TRMT12Q53H54 448 aaKnown RBP7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 HSDL2Q6YN16 418 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 MIER2Q8N344 545 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 KLHL36Q8N4N3 616 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 ZNF781Q8N8C0 355 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 OR9A2Q8NGT5 310 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 CREB3L4Q8TEY5 395 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 ASB15Q8WXK1 588 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 UBE2E3Q969T4 207 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 GAL3ST3Q96A11 431 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 UTP23Q9BRU9 249 aaKnown RBP7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 MS4A8Q9BY19 250 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 SPRY4Q9C004 299 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 LHPPQ9H008 270 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 MUC13Q9H3R2 512 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 BIN3Q9NQY0 253 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 SUCOQ9UBS9 1254 aaKnown RBP7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 B3GNT3Q9Y2A9 372 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 NPIPA5A0A0B4J1W7 369 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 J3QKU1 62 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 HSPA12AO43301 675 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 COX5BP10606 129 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 PTX3P26022 381 aaPredicted RBP7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 WNT3P56703 355 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 RAB25P57735 213 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 KCNC4Q03721 635 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 LCP2Q13094 533 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 OR1C1Q15619 314 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 JMJD6Q6NYC1 403 aaPredicted RBP7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 TMEM65Q6PI78 240 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 TMEM107Q6UX40 140 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 NDUFAF7Q7L592 441 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 OR5M1Q8NGP8 315 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 TTC9Q92623 222 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 PDLIM5Q96HC4 596 aaKnown RBP7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 DPCDQ9BVM2 203 aaPredicted RBP7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 ACPTQ9BZG2 426 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 TMEM185BQ9H7F4 350 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 PNPLA3Q9NST1 481 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 ZNF780BQ9Y6R6 833 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 A0A1B0GWJ7 208 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 AP3D1O14617 1153 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 EDF1O60869 148 aaKnown RBP7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 CLN5O75503 358 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 SLC25A12O75746 678 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 COX6A1P12074 109 aa7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 NCBP2P52298 156 aaKnown RBP eCLIP7.27□□□□□ -1.25
LIMCH1-219ENST00000514096 FAM53BQ14153 422 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms