RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 DEFB110Q30KQ9 67 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 SLC25A24Q6NUK1 477 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 ULK3Q6PHR2 472 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 TMEM205Q6UW68 189 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 TMEFF1Q8IYR6 380 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 POGLUT1Q8NBL1 392 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 PPP1R14AQ96A00 147 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 MRI1Q9BV20 369 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 ATP13A2Q9NQ11 1180 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 ACTR10Q9NZ32 417 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 SLC6A14Q9UN76 642 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 A4GNTQ9UNA3 340 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 NPIPA1Q9UND3 350 aa7.83□□□□□ -1.16
LIMCH1-216ENST00000512820 H3BQ06 376 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 H7C2Y5 167 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 SPDEFO95238 335 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 CTGFP29279 349 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 PTPN6P29350 595 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 AGTR1P30556 359 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 C21orf58P58505 322 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 TNFRSF17Q02223 184 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 KIR2DS3Q14952 304 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 ALG10Q5BKT4 473 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 UBE2NLQ5JXB2 153 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 ZNF440Q8IYI8 595 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 CMKLR1Q99788 373 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 ZNF436Q9C0F3 470 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 OR52A5Q9H2C5 316 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 METTL8Q9H825 291 aaKnown RBP7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 SLC39A1Q9NY26 324 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 CAMK2AQ9UQM7 478 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 RBBP6Q7Z6E9 1792 aaKnown RBP7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 SGK494L7N484 410 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 FCMRO60667 390 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 GATBO75879 557 aaKnown RBP7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 GPR75O95800 540 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 AMY2AP04746 511 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 DLX5P56178 289 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 EIF5AP63241 154 aaKnown RBP7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 SCRN3Q0VDG4 424 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 TMEM52BQ4KMG9 183 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 ZNF542PQ5EBM4 170 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 CD276Q5ZPR3 534 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 ZNF836Q6ZNA1 936 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 ZNF615Q8N8J6 731 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 MS4A6EQ96DS6 147 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 OR14A2Q96R54 314 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 TEAD3Q99594 435 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 ATF6BQ99941 703 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 IL23AQ9NPF7 189 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 NRIP3Q9NQ35 241 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 ZBTB32Q9Y2Y4 487 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 NPFFR2Q9Y5X5 522 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 TVP23AA6NH52 213 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 GPRIN2O60269 458 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 RDH16O75452 317 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 PLATP00750 562 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 EGFP01133 1207 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 OR2T7P0C7T2 308 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 F3P13726 295 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 PKLRP30613 574 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 PCBP3P57721 371 aaKnown RBP7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 ACTBP60709 375 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 ACTG1P63261 375 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 C1orf61Q13536 156 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 OPCMLQ14982 345 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 CDNFQ49AH0 187 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 LAIR1Q6GTX8 287 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 LRFN4Q6PJG9 635 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 SLC29A4Q7RTT9 530 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 ZNF761Q86XN6 746 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 ADGRF3Q8IZF5 1079 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 TCTE3Q8IZS6 198 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 RDH10Q8IZV5 341 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 OR2T27Q8NH04 317 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 PFN4Q8NHR9 129 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 RNASE11Q8TAA1 199 aaKnown RBP7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 ZNF417Q8TAU3 575 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 GPR148Q8TDV2 347 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 FBLIM1Q8WUP2 373 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 NXPE3Q969Y0 559 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 MYADMQ96S97 322 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 DPYSL5Q9BPU6 564 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 FN3KQ9H479 309 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 STARD5Q9NSY2 213 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 KCMF1Q9P0J7 381 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 ZNF281Q9Y2X9 895 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 CHST2Q9Y4C5 530 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 A0A0A6YYJ9 748 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 MEIS3P1A6NDR6 274 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 MAN2B1O00754 1011 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 NARSO43776 548 aaKnown RBP7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 RAD1O60671 282 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 PGAM2P15259 253 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 UGT2B7P16662 529 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 FXYD6P3P58550 94 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 GK2Q14410 553 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 TCTE1Q5JU00 501 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 PRSS45Q7RTY3 260 aa7.82□□□□□ -1.16
LIMCH1-216ENST00000512820 FOXRED2Q8IWF2 684 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms