RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 UPK1AO00322 258 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 GMFGO60234 142 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 PLOD3O60568 738 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 TRIM3O75382 744 aaPredicted RBP4.11□□□□□ -1.75
NUP54-206ENST00000508465 RSL1D1O76021 490 aaKnown RBP4.11□□□□□ -1.75
NUP54-206ENST00000508465 IGKV1D-16P01601 117 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 LAMP1P11279 417 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 PRF1P14222 555 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 SDC1P18827 310 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 GDF1P27539 372 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 HTR1EP28566 365 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 GABRA3P34903 492 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 RFX3P48380 749 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 SLC1A6P48664 564 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 THBS3P49746 956 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 CDK9P50750 372 aaKnown RBP4.11□□□□□ -1.75
NUP54-206ENST00000508465 NME5P56597 212 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 WNT3P56703 355 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 ABCE1P61221 599 aaKnown RBP4.11□□□□□ -1.75
NUP54-206ENST00000508465 MAGOHP61326 146 aaKnown RBP4.11□□□□□ -1.75
NUP54-206ENST00000508465 NAA20P61599 178 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 RPL38P63173 70 aaKnown RBP4.11□□□□□ -1.75
NUP54-206ENST00000508465 PLCXD2Q0VAA5 305 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 ZNF155Q12901 538 aaPredicted RBP4.11□□□□□ -1.75
NUP54-206ENST00000508465 FOXD4Q12950 439 aaPredicted RBP4.11□□□□□ -1.75
NUP54-206ENST00000508465 HSPB3Q12988 150 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 STX3Q13277 289 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 PDCD2Q16342 344 aaPredicted RBP4.11□□□□□ -1.75
NUP54-206ENST00000508465 PGS1Q32NB8 556 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 EIPR1Q53HC9 387 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 C6orf136Q5SQH8 315 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 BEND6Q5SZJ8 279 aaPredicted RBP4.11□□□□□ -1.75
NUP54-206ENST00000508465 IL23RQ5VWK5 629 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 TMEM198Q66K66 360 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 ARHGAP11AQ6P4F7 1023 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 PLXDC2Q6UX71 529 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 ANGPTL8Q6UXH0 198 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 NPSR1Q6W5P4 371 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 RGS9BPQ6ZS82 235 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 NUP54Q7Z3B4 507 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 FAM9CQ8IZT9 166 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 SLC34A3Q8N130 599 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 CLEC4FQ8N1N0 589 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 FBXW8Q8N3Y1 598 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 ZNF781Q8N8C0 355 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 OR10Q1Q8NGQ4 319 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 FAM76AQ8TAV0 307 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 FBXO30Q8TB52 745 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 PIK3R3Q92569 461 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 HGDQ93099 445 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 EFHD2Q96C19 240 aaPredicted RBP4.11□□□□□ -1.75
NUP54-206ENST00000508465 PPCDCQ96CD2 204 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 TUBGCP3Q96CW5 907 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 C1GALT1C1Q96EU7 318 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 VSTM2LQ96N03 204 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 COL21A1Q96P44 957 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 DMRTA2Q96SC8 542 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 SORT1Q99523 831 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 VRK1Q99986 396 aaPredicted RBP4.11□□□□□ -1.75
NUP54-206ENST00000508465 TRMOQ9BU70 441 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 RTN4RQ9BZR6 473 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 REEP4Q9H6H4 257 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 METTL7AQ9H8H3 244 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 ZDHHC11Q9H8X9 412 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 TAS2R7Q9NYW3 318 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 SENP1Q9P0U3 644 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 PRODH2Q9UF12 536 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 MID2Q9UJV3 735 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 BOKQ9UMX3 212 aaPredicted RBP4.11□□□□□ -1.75
NUP54-206ENST00000508465 C19orf53Q9UNZ5 99 aaPredicted RBP4.11□□□□□ -1.75
NUP54-206ENST00000508465 LRCH1Q9Y2L9 728 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 OR10H1Q9Y4A9 318 aa4.11□□□□□ -1.75
NUP54-206ENST00000508465 CACNA1DQ01668 2161 aa4.1□□□□□ -1.75
NUP54-206ENST00000508465 NBPF19A0A087WUL8 3843 aa4.1□□□□□ -1.75
NUP54-206ENST00000508465 ZNF407Q9C0G0 2248 aa4.1□□□□□ -1.75
NUP54-206ENST00000508465 MAP1AP78559 2803 aaPredicted RBP4.1□□□□□ -1.75
NUP54-206ENST00000508465 SPTBN1Q01082 2364 aaKnown RBP4.1□□□□□ -1.75
NUP54-206ENST00000508465 C15orf38-AP3S2A0A0A6YYH1 394 aa4.1□□□□□ -1.75
NUP54-206ENST00000508465 A0A1B0GVC2 190 aa4.1□□□□□ -1.75
NUP54-206ENST00000508465 TMEM120BA0PK00 339 aa4.1□□□□□ -1.75
NUP54-206ENST00000508465 NKX2-6A6NCS4 301 aa4.1□□□□□ -1.75
NUP54-206ENST00000508465 FRG2CA6NGY1 282 aa4.1□□□□□ -1.75
NUP54-206ENST00000508465 FAM90A8PA6NJQ4 464 aa4.1□□□□□ -1.75
NUP54-206ENST00000508465 B4DXG7 233 aa4.1□□□□□ -1.75
NUP54-206ENST00000508465 C9JVG2 144 aa4.1□□□□□ -1.75
NUP54-206ENST00000508465 H3BML4 177 aa4.1□□□□□ -1.75
NUP54-206ENST00000508465 H3BQF6 201 aa4.1□□□□□ -1.75
NUP54-206ENST00000508465 PLOD2O00469 737 aa4.1□□□□□ -1.75
NUP54-206ENST00000508465 TO15178 435 aa4.1□□□□□ -1.75
NUP54-206ENST00000508465 BIRC5O15392 142 aa4.1□□□□□ -1.75
NUP54-206ENST00000508465 CFLARO15519 480 aa4.1□□□□□ -1.75
NUP54-206ENST00000508465 SCO2O43819 266 aa4.1□□□□□ -1.75
NUP54-206ENST00000508465 FADS1O60427 444 aa4.1□□□□□ -1.75
NUP54-206ENST00000508465 ZIC3O60481 467 aa4.1□□□□□ -1.75
NUP54-206ENST00000508465 TSPAN2O60636 221 aa4.1□□□□□ -1.75
NUP54-206ENST00000508465 BCAS2O75934 225 aaPredicted RBP4.1□□□□□ -1.75
NUP54-206ENST00000508465 SNX4O95219 450 aa4.1□□□□□ -1.75
NUP54-206ENST00000508465 IGHG3P01860 377 aa4.1□□□□□ -1.75
NUP54-206ENST00000508465 C1QCP02747 245 aa4.1□□□□□ -1.75
NUP54-206ENST00000508465 OPN1LWP04000 364 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms