RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 HIPK4Q8NE63 616 aa14.72□□□□□ -0.05
SF3A1-209ENST00000496189 FAM71CQ8NEG0 241 aa14.72□□□□□ -0.05
SF3A1-209ENST00000496189 NFKBIDQ8NI38 313 aa14.72□□□□□ -0.05
SF3A1-209ENST00000496189 FNDC9Q8TBE3 224 aa14.72□□□□□ -0.05
SF3A1-209ENST00000496189 POC1BQ8TC44 478 aa14.72□□□□□ -0.05
SF3A1-209ENST00000496189 SLC25A43Q8WUT9 341 aaPredicted RBP14.72□□□□□ -0.05
SF3A1-209ENST00000496189 CPNE4Q96A23 557 aaPredicted RBP14.72□□□□□ -0.05
SF3A1-209ENST00000496189 ZG16BQ96DA0 208 aa14.72□□□□□ -0.05
SF3A1-209ENST00000496189 ZNF607Q96SK3 696 aa14.72□□□□□ -0.05
SF3A1-209ENST00000496189 ENKD1Q9H0I2 346 aa14.72□□□□□ -0.05
SF3A1-209ENST00000496189 ACER3Q9NUN7 267 aa14.72□□□□□ -0.05
SF3A1-209ENST00000496189 PRDM4Q9UKN5 801 aa14.72□□□□□ -0.05
SF3A1-209ENST00000496189 EMC9Q9Y3B6 208 aa14.72□□□□□ -0.05
SF3A1-209ENST00000496189 CACNA1CQ13936 2221 aa14.72□□□□□ -0.05
SF3A1-209ENST00000496189 DSPPQ9NZW4 1301 aa14.71□□□□□ -0.05
SF3A1-209ENST00000496189 CFAP73A6NFT4 308 aa14.71□□□□□ -0.05
SF3A1-209ENST00000496189 FXYD1O00168 92 aa14.71□□□□□ -0.05
SF3A1-209ENST00000496189 CXCL13O43927 109 aa14.71□□□□□ -0.05
SF3A1-209ENST00000496189 TGM6O95932 706 aa14.71□□□□□ -0.05
SF3A1-209ENST00000496189 OPN1LWP04000 364 aa14.71□□□□□ -0.05
SF3A1-209ENST00000496189 RPS4Y1P22090 263 aaKnown RBP14.71□□□□□ -0.05
SF3A1-209ENST00000496189 CTBP2P56545 445 aa14.71□□□□□ -0.05
SF3A1-209ENST00000496189 SESN3P58005 492 aa14.71□□□□□ -0.05
SF3A1-209ENST00000496189 TFF3Q07654 80 aa14.71□□□□□ -0.05
SF3A1-209ENST00000496189 SELPLGQ14242 412 aa14.71□□□□□ -0.05
SF3A1-209ENST00000496189 MAPK11Q15759 364 aa14.71□□□□□ -0.05
SF3A1-209ENST00000496189 TMEM176BQ3YBM2 270 aaPredicted RBP14.71□□□□□ -0.05
SF3A1-209ENST00000496189 MRPL2Q5T653 305 aaKnown RBP14.71□□□□□ -0.05
SF3A1-209ENST00000496189 INTS11Q5TA45 600 aaKnown RBP14.71□□□□□ -0.05
SF3A1-209ENST00000496189 FAM91A1Q658Y4 838 aa14.71□□□□□ -0.05
SF3A1-209ENST00000496189 GRINAQ7Z429 371 aa14.71□□□□□ -0.05
SF3A1-209ENST00000496189 RELL2Q8NC24 303 aaPredicted RBP14.71□□□□□ -0.05
SF3A1-209ENST00000496189 OR10A6Q8NH74 314 aa14.71□□□□□ -0.05
SF3A1-209ENST00000496189 FIG4Q92562 907 aa14.71□□□□□ -0.05
SF3A1-209ENST00000496189 OSTF1Q92882 214 aa14.71□□□□□ -0.05
SF3A1-209ENST00000496189 RNASE6Q93091 150 aaKnown RBP14.71□□□□□ -0.05
SF3A1-209ENST00000496189 ZNF845Q96IR2 970 aaPredicted RBP14.71□□□□□ -0.05
SF3A1-209ENST00000496189 FANCFQ9NPI8 374 aa14.71□□□□□ -0.05
SF3A1-209ENST00000496189 GLRX2Q9NS18 164 aa14.71□□□□□ -0.05
SF3A1-209ENST00000496189 TAGLN3Q9UI15 199 aa14.71□□□□□ -0.05
SF3A1-209ENST00000496189 PACSIN3Q9UKS6 424 aa14.71□□□□□ -0.05
SF3A1-209ENST00000496189 MED12Q93074 2177 aa14.7□□□□□ -0.06
SF3A1-209ENST00000496189 A0A1W2PNV4 684 aa14.7□□□□□ -0.06
SF3A1-209ENST00000496189 PRORSD1PA6NEY8 169 aa14.7□□□□□ -0.06
SF3A1-209ENST00000496189 ETV2O00321 342 aaPredicted RBP14.7□□□□□ -0.06
SF3A1-209ENST00000496189 SYT5O00445 386 aa14.7□□□□□ -0.06
SF3A1-209ENST00000496189 DNAJA2O60884 412 aa14.7□□□□□ -0.06
SF3A1-209ENST00000496189 SMNDC1O75940 238 aaKnown RBP eCLIP14.7□□□□□ -0.06
SF3A1-209ENST00000496189 TFPIP10646 304 aa14.7□□□□□ -0.06
SF3A1-209ENST00000496189 SSTR2P30874 369 aa14.7□□□□□ -0.06
SF3A1-209ENST00000496189 IDH2P48735 452 aaKnown RBP14.7□□□□□ -0.06
SF3A1-209ENST00000496189 MYBPHQ13203 477 aa14.7□□□□□ -0.06
SF3A1-209ENST00000496189 KRT72Q14CN4 511 aa14.7□□□□□ -0.06
SF3A1-209ENST00000496189 ADRM1Q16186 407 aa14.7□□□□□ -0.06
SF3A1-209ENST00000496189 RABL3Q5HYI8 236 aa14.7□□□□□ -0.06
SF3A1-209ENST00000496189 ZNF311Q5JNZ3 666 aa14.7□□□□□ -0.06
SF3A1-209ENST00000496189 RPS26P11Q5JNZ5 115 aaPredicted RBP14.7□□□□□ -0.06
SF3A1-209ENST00000496189 RNF220Q5VTB9 566 aa14.7□□□□□ -0.06
SF3A1-209ENST00000496189 ERICH5Q6P6B1 374 aa14.7□□□□□ -0.06
SF3A1-209ENST00000496189 PLXDC2Q6UX71 529 aa14.7□□□□□ -0.06
SF3A1-209ENST00000496189 PLEKHM3Q6ZWE6 761 aa14.7□□□□□ -0.06
SF3A1-209ENST00000496189 ZNF550Q7Z398 422 aa14.7□□□□□ -0.06
SF3A1-209ENST00000496189 NET1Q7Z628 596 aaPredicted RBP14.7□□□□□ -0.06
SF3A1-209ENST00000496189 BHLHE22Q8NFJ8 381 aaPredicted RBP14.7□□□□□ -0.06
SF3A1-209ENST00000496189 CNOT9Q92600 299 aaKnown RBP14.7□□□□□ -0.06
SF3A1-209ENST00000496189 ZHX1-C8orf76Q96EF9 292 aa14.7□□□□□ -0.06
SF3A1-209ENST00000496189 NPAS1Q99742 590 aa14.7□□□□□ -0.06
SF3A1-209ENST00000496189 TRIM8Q9BZR9 551 aa14.7□□□□□ -0.06
SF3A1-209ENST00000496189 RNF122Q9H9V4 155 aa14.7□□□□□ -0.06
SF3A1-209ENST00000496189 NDE1Q9NXR1 346 aa14.7□□□□□ -0.06
SF3A1-209ENST00000496189 DNAJB12Q9NXW2 375 aaKnown RBP14.7□□□□□ -0.06
SF3A1-209ENST00000496189 SLC13A4Q9UKG4 626 aa14.7□□□□□ -0.06
SF3A1-209ENST00000496189 ZNF443Q9Y2A4 671 aaPredicted RBP14.7□□□□□ -0.06
SF3A1-209ENST00000496189 A0A0J9YW62 118 aa14.69□□□□□ -0.06
SF3A1-209ENST00000496189 CLDN24A6NM45 220 aa14.69□□□□□ -0.06
SF3A1-209ENST00000496189 PCGF2P35227 344 aa14.69□□□□□ -0.06
SF3A1-209ENST00000496189 CSNK2A1P68400 391 aaPredicted RBP14.69□□□□□ -0.06
SF3A1-209ENST00000496189 SIRPAP78324 504 aa14.69□□□□□ -0.06
SF3A1-209ENST00000496189 FOXF2Q12947 444 aa14.69□□□□□ -0.06
SF3A1-209ENST00000496189 RNPS1Q15287 305 aaKnown RBP14.69□□□□□ -0.06
SF3A1-209ENST00000496189 FBXL19-AS1Q494R0 122 aa14.69□□□□□ -0.06
SF3A1-209ENST00000496189 PATL1Q86TB9 770 aaKnown RBP14.69□□□□□ -0.06
SF3A1-209ENST00000496189 LUZP2Q86TE4 346 aa14.69□□□□□ -0.06
SF3A1-209ENST00000496189 VRK2Q86Y07 508 aa14.69□□□□□ -0.06
SF3A1-209ENST00000496189 PTOV1Q86YD1 416 aa14.69□□□□□ -0.06
SF3A1-209ENST00000496189 DMRTC2Q8IXT2 367 aaPredicted RBP14.69□□□□□ -0.06
SF3A1-209ENST00000496189 C10orf111Q8N326 155 aa14.69□□□□□ -0.06
SF3A1-209ENST00000496189 GMPPAQ96IJ6 420 aaPredicted RBP14.69□□□□□ -0.06
SF3A1-209ENST00000496189 ADGRG7Q96K78 797 aa14.69□□□□□ -0.06
SF3A1-209ENST00000496189 OR5B2Q96R09 309 aa14.69□□□□□ -0.06
SF3A1-209ENST00000496189 KLHDC3Q9BQ90 382 aa14.69□□□□□ -0.06
SF3A1-209ENST00000496189 RBM24Q9BX46 236 aaKnown RBP14.69□□□□□ -0.06
SF3A1-209ENST00000496189 NPDC1Q9NQX5 325 aaPredicted RBP14.69□□□□□ -0.06
SF3A1-209ENST00000496189 CHRNA9Q9UGM1 479 aa14.69□□□□□ -0.06
SF3A1-209ENST00000496189 PROCRQ9UNN8 238 aa14.69□□□□□ -0.06
SF3A1-209ENST00000496189 PCNX3Q9H6A9 2034 aa14.69□□□□□ -0.06
SF3A1-209ENST00000496189 CDHR4A6H8M9 788 aa14.68□□□□□ -0.06
SF3A1-209ENST00000496189 FAAHO00519 579 aa14.68□□□□□ -0.06
SF3A1-209ENST00000496189 MSTNO14793 375 aa14.68□□□□□ -0.06
SF3A1-209ENST00000496189 NTN1O95631 604 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms