RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	FAM153C	Q494X1	144 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	DEFB134	Q4QY38	66 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	IGFL4	Q6B9Z1	124 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	RTL6	Q6ICC9	239 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	ADNP2	Q6IQ32	1131 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	SLC25A25	Q6KCM7	469 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	NEPRO	Q6NW34	567 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	AGTRAP	Q6RW13	159 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	PAMR1	Q6UXH9	720 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	ZNF813	Q6ZN06	617 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	CNTN4	Q8IWV2	1026 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	SUPV3L1	Q8IYB8	786 aa	Known RBP eCLIP	3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	CYP4Z2P	Q8N1L4	340 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	RASGEF1C	Q8N431	466 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	SPATA6L	Q8N4H0	392 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	PNLDC1	Q8NA58	520 aa	Known RBP	3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	TEX45	Q8NA69	505 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	RELL2	Q8NC24	303 aa	Predicted RBP	3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	FAM98A	Q8NCA5	519 aa	Known RBP	3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	PLPP5	Q8NEB5	264 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	OR4K1	Q8NGD4	311 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	UTP15	Q8TED0	518 aa	Known RBP	3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	CA5BP1	Q8WTZ4	195 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	DVL3	Q92997	716 aa	Predicted RBP	3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	EXT2	Q93063	718 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	CAVIN3	Q969G5	261 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	NEIL2	Q969S2	332 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	TMEM18	Q96B42	140 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	MSI2	Q96DH6	328 aa	Known RBP	3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	CSF3R	Q99062	836 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	DDO	Q99489	341 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	CACNG6	Q9BXT2	260 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	KLHL31	Q9H511	634 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	MAGIX	Q9H6Y5	334 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	PPP1R3E	Q9H7J1	279 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	SEBOX	Q9HB31	216 aa	Predicted RBP	3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	ANKH	Q9HCJ1	492 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	EQTN	Q9NQ60	294 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	ACSS1	Q9NUB1	689 aa	Predicted RBP	3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	TMEM184C	Q9NVA4	438 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	UTP6	Q9NYH9	597 aa	Known RBP	3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	STMN3	Q9NZ72	180 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	CNOT11	Q9UKZ1	510 aa	Known RBP	3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	DHRS7	Q9Y394	339 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	ABCA1	O95477	2261 aa		3.84	□□□□□ -1.79
VPS52-222	ENST00000495981	EML6	Q6ZMW3	1958 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981		A0A1W2PRV1	198 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	LRRC3C	A6NJW4	275 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	FAM166B	A8MTA8	275 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981		M0QZ24	198 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	AP3B1	O00203	1094 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	NDC80	O14777	642 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	CHST10	O43529	356 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	ZNF354A	O60765	605 aa	Predicted RBP	3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	BANF1	O75531	89 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	MYO1D	O94832	1006 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	OR6B1	O95007	311 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	IGHG3	P01860	377 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	FGG	P02679	453 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	C8G	P07360	202 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	SMIM10L1	P0DMW3	83 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	MLN	P12872	115 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	HOXA5	P20719	270 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	JAK1	P23458	1154 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	PIGA	P37287	484 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	CASP3	P42574	277 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	KCNJ1	P48048	391 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	NPY2R	P49146	381 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	CYB561	P49447	251 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	OR4D2	P58180	307 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	KIF5A	Q12840	1032 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	DHX34	Q14147	1143 aa	Known RBP	3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	SMN1	Q16637	294 aa	Known RBP	3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	PDLIM3	Q53GG5	364 aa	Predicted RBP	3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	CES4A	Q5XG92	561 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	FAM91A1	Q658Y4	838 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	CAPN13	Q6MZZ7	669 aa	Predicted RBP	3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	ARHGAP11A	Q6P4F7	1023 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	C4orf22	Q6V702	233 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	TMPRSS11B	Q86T26	416 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	C17orf64	Q86WR6	236 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	RPS19BP1	Q86WX3	136 aa	Known RBP	3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	FOXRED2	Q8IWF2	684 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	KLHDC8A	Q8IYD2	350 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	CA13	Q8N1Q1	262 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	NHLRC2	Q8NBF2	726 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	B3GNT7	Q8NFL0	401 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	OR2M7	Q8NG81	312 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	OR1J2	Q8NGS2	313 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	LILRB4	Q8NHJ6	448 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	OSR1	Q8TAX0	266 aa	Predicted RBP	3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	SLC13A3	Q8WWT9	602 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	SLCO2A1	Q92959	643 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	SPSB1	Q96BD6	273 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	SARAF	Q96BY9	339 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	PYCR2	Q96C36	320 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	RHBDF1	Q96CC6	855 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	LINGO1	Q96FE5	620 aa		3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	RMND5B	Q96G75	393 aa	Predicted RBP	3.83	□□□□□ -1.8
VPS52-222	ENST00000495981	SMIM10	Q96HG1	83 aa		3.83	□□□□□ -1.8

Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms