RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 GMDSO60547 372 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 UGT1A9O60656 530 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 CYTIPO60759 359 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 CDH16O75309 829 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 CRTAPO75718 401 aaPredicted RBP1.79□□□□□ -2.12
HMGB1-208ENST00000490788 ATP6AP2O75787 350 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 CNMDO75829 334 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 SLCO2B1O94956 709 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 PGLSO95336 258 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 DHFRP00374 187 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 OAS1P00973 400 aaKnown RBP1.79□□□□□ -2.12
HMGB1-208ENST00000490788 IGHV3-13P01766 116 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 APOC1P02654 83 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 FCER2P06734 321 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 RPS17P08708 135 aaKnown RBP1.79□□□□□ -2.12
HMGB1-208ENST00000490788 PAEPP09466 180 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 KRT3P12035 628 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 HLA-EP13747 358 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 UGT1A6P19224 532 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 PTAFRP25105 342 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 PTBP1P26599 531 aaKnown RBP eCLIP1.79□□□□□ -2.12
HMGB1-208ENST00000490788 CD27P26842 260 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 RRM2P31350 389 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 UGT1A3P35503 534 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 UGT1A5P35504 534 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 NAMPTP43490 491 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 RPL5P46777 297 aaKnown RBP1.79□□□□□ -2.12
HMGB1-208ENST00000490788 CXCL12P48061 93 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 NOVP48745 357 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 DHPSP49366 369 aaPredicted RBP1.79□□□□□ -2.12
HMGB1-208ENST00000490788 CASP4P49662 377 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 PGFP49763 221 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 SERPINB9P50453 376 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 P2RY4P51582 365 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 AKR1D1P51857 326 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 KPNA2P52292 529 aaKnown RBP1.79□□□□□ -2.12
HMGB1-208ENST00000490788 SLC7A2P52569 658 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 MTCP1P56278 107 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 AP1S2P56377 157 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 BACE1P56817 501 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 STX17P56962 302 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 SPCS3P61009 180 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 ERVK-16P61578 105 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 COPZ1P61923 177 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 YWHAEP62258 255 aaKnown RBP1.79□□□□□ -2.12
HMGB1-208ENST00000490788 ERVK-8P63133 956 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 UBE2IP63279 158 aaKnown RBP1.79□□□□□ -2.12
HMGB1-208ENST00000490788 XIAPP98170 497 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 CDK16Q00536 496 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 PAX8Q06710 450 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 CKAP4Q07065 602 aaKnown RBP1.79□□□□□ -2.12
HMGB1-208ENST00000490788 SLC3A1Q07837 685 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 MZT1Q08AG7 82 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 PMS2P3Q13401 168 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 MADCAM1Q13477 382 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 NAB1Q13506 487 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 CAMK2DQ13557 499 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 GIT2Q14161 759 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 MLF2Q15773 248 aaPredicted RBP1.79□□□□□ -2.12
HMGB1-208ENST00000490788 SSX2Q16385 188 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 DUSP7Q16829 419 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 ZNF674Q2M3X9 581 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 NADK2Q4G0N4 442 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 SAPCD1Q5SSQ6 148 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 SPOUT1Q5T280 376 aaKnown RBP1.79□□□□□ -2.12
HMGB1-208ENST00000490788 CCNJQ5T5M9 372 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 BEND3Q5T5X7 828 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 HES5Q5TA89 166 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 ATP1A1-AS1Q5TC04 95 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 FHL5Q5TD97 284 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 PLPP4Q5VZY2 271 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 RAET1GQ6H3X3 334 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 SPINK14Q6IE38 97 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 C3orf33Q6P1S2 294 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 TTC27Q6P3X3 843 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 PRSS55Q6UWB4 352 aaPredicted RBP1.79□□□□□ -2.12
HMGB1-208ENST00000490788 C5orf46Q6UWT4 87 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 IZUMO2Q6UXV1 221 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 RBPMS2Q6ZRY4 209 aaKnown RBP1.79□□□□□ -2.12
HMGB1-208ENST00000490788 RBM43Q6ZSC3 357 aaKnown RBP1.79□□□□□ -2.12
HMGB1-208ENST00000490788 UTS2BQ765I0 119 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 PLPPR4Q7Z2D5 763 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 NET1Q7Z628 596 aaPredicted RBP1.79□□□□□ -2.12
HMGB1-208ENST00000490788 RABEPKQ7Z6M1 372 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 TPRA1Q86W33 373 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 ZFAND4Q86XD8 727 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 CATSPERDQ86XM0 798 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 RNF130Q86XS8 419 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 CDC20BQ86Y33 519 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 MARCH9Q86YJ5 346 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 CCDC60Q8IWA6 550 aaPredicted RBP1.79□□□□□ -2.12
HMGB1-208ENST00000490788 IQCKQ8N0W5 287 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 CADM2Q8N3J6 435 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 PI4KAP1Q8N8J0 262 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 AMER3Q8N944 861 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 OR52B6Q8NGF0 335 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 OR56B2PQ8NGI1 322 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 ZNF671Q8TAW3 534 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 NANPQ8TBE9 248 aa1.79□□□□□ -2.12
HMGB1-208ENST00000490788 SLC2A14Q8TDB8 520 aa1.79□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms