RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 LOXL2Q9Y4K0 774 aa11.18□□□□□ -0.62
HDAC6-230ENST00000488543 IGHV3-20A0A0C4DH32 117 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 FMO6PO60774 539 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 CSO75390 466 aaKnown RBP11.17□□□□□ -0.62
HDAC6-230ENST00000488543 ZGLP1P0C6A0 271 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 PTNP21246 168 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 RPS19P39019 145 aaKnown RBP11.17□□□□□ -0.62
HDAC6-230ENST00000488543 CDC42P60953 191 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 DBPQ10586 325 aaPredicted RBP11.17□□□□□ -0.62
HDAC6-230ENST00000488543 COX10Q12887 443 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 ELAVL1Q15717 326 aaKnown RBP11.17□□□□□ -0.62
HDAC6-230ENST00000488543 C1QTNF12Q5T7M4 302 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 NXNL2Q5VZ03 156 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 RAB11FIP2Q7L804 512 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 RANBP3LQ86VV4 465 aaPredicted RBP11.17□□□□□ -0.62
HDAC6-230ENST00000488543 GRAMD2AQ8IUY3 354 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 OR8H2Q8N162 312 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 SLC2A12Q8TD20 617 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 GNPDA2Q8TDQ7 276 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 CAPSLQ8WWF8 208 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 ACOT11Q8WXI4 607 aaPredicted RBP11.17□□□□□ -0.62
HDAC6-230ENST00000488543 TMEM203Q969S6 136 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 ARSGQ96EG1 525 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 NUDT9Q9BW91 350 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 POLR2J2Q9GZM3 115 aaKnown RBP11.17□□□□□ -0.62
HDAC6-230ENST00000488543 TGIF2Q9GZN2 237 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 NUAK2Q9H093 628 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 HHATLQ9HCP6 504 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 SNTG1Q9NSN8 517 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 SLC7A7Q9UM01 511 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 AHCTF1Q8WYP5 2266 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 IGLV3-12A0A075B6K2 115 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 TRAPPC13A5PLN9 417 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 KLF4O43474 513 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 PIP5K1CO60331 668 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 MRPS14O60783 128 aaKnown RBP11.17□□□□□ -0.62
HDAC6-230ENST00000488543 ADAM11O75078 769 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 MT-CO3P00414 261 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 CASP3P42574 277 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 LIMK1P53667 647 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 E2F1Q01094 437 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 FGFBP1Q14512 234 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 OR1Q1Q15612 314 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 TAB1Q15750 504 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.17□□□□□ -0.62
HDAC6-230ENST00000488543 ZNF181Q2M3W8 571 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 CDCP2Q5VXM1 449 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 ZNF730Q6ZMV8 503 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 WDR88Q6ZMY6 472 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 POGLUT1Q8NBL1 392 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 PLPP5Q8NEB5 264 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 TMEM255BQ8WV15 326 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 SLC46A1Q96NT5 459 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 OR8D2Q9GZM6 311 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 NXF2Q9GZY0 626 aaKnown RBP11.17□□□□□ -0.62
HDAC6-230ENST00000488543 DNAJB12Q9NXW2 375 aaKnown RBP11.17□□□□□ -0.62
HDAC6-230ENST00000488543 PISDQ9UG56 409 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 CARD8Q9Y2G2 431 aa11.17□□□□□ -0.62
HDAC6-230ENST00000488543 YARS2Q9Y2Z4 477 aaKnown RBP11.17□□□□□ -0.62
HDAC6-230ENST00000488543 TCEA1P23193 301 aaKnown RBP11.16□□□□□ -0.62
HDAC6-230ENST00000488543 ACAA2P42765 397 aaKnown RBP11.16□□□□□ -0.62
HDAC6-230ENST00000488543 ATP12AP54707 1039 aa11.16□□□□□ -0.62
HDAC6-230ENST00000488543 CSNK2BP67870 215 aa11.16□□□□□ -0.62
HDAC6-230ENST00000488543 HES3Q5TGS1 186 aa11.16□□□□□ -0.62
HDAC6-230ENST00000488543 PLAG1Q6DJT9 500 aa11.16□□□□□ -0.62
HDAC6-230ENST00000488543 LINC00299Q6ZSB3 139 aa11.16□□□□□ -0.62
HDAC6-230ENST00000488543 MBOAT2Q6ZWT7 520 aa11.16□□□□□ -0.62
HDAC6-230ENST00000488543 LAX1Q8IWV1 398 aa11.16□□□□□ -0.62
HDAC6-230ENST00000488543 TCEANCQ8N8B7 351 aa11.16□□□□□ -0.62
HDAC6-230ENST00000488543 ADIPOR1Q96A54 375 aa11.16□□□□□ -0.62
HDAC6-230ENST00000488543 FAM46AQ96IP4 442 aaKnown RBP11.16□□□□□ -0.62
HDAC6-230ENST00000488543 G6PC3Q9BUM1 346 aa11.16□□□□□ -0.62
HDAC6-230ENST00000488543 MFRPQ9BY79 579 aa11.16□□□□□ -0.62
HDAC6-230ENST00000488543 EVA1AQ9H8M9 152 aa11.16□□□□□ -0.62
HDAC6-230ENST00000488543 SP140LQ9H930 580 aa11.16□□□□□ -0.62
HDAC6-230ENST00000488543 CLN6Q9NWW5 311 aa11.16□□□□□ -0.62
HDAC6-230ENST00000488543 TESQ9UGI8 421 aaKnown RBP11.16□□□□□ -0.62
HDAC6-230ENST00000488543 ZNF223Q9UK11 482 aaPredicted RBP11.16□□□□□ -0.62
HDAC6-230ENST00000488543 OR10H1Q9Y4A9 318 aa11.16□□□□□ -0.62
HDAC6-230ENST00000488543 TAF4O00268 1085 aa11.16□□□□□ -0.62
HDAC6-230ENST00000488543 CPNE3O75131 537 aaKnown RBP11.16□□□□□ -0.62
HDAC6-230ENST00000488543 CLEC2LP0C7M8 214 aa11.16□□□□□ -0.62
HDAC6-230ENST00000488543 IFNA8P32881 189 aa11.16□□□□□ -0.62
HDAC6-230ENST00000488543 PPICP45877 212 aa11.16□□□□□ -0.62
HDAC6-230ENST00000488543 CDC20Q12834 499 aa11.16□□□□□ -0.62
HDAC6-230ENST00000488543 TSPAN31Q12999 210 aa11.16□□□□□ -0.62
HDAC6-230ENST00000488543 SHFQ7M4L6 423 aa11.16□□□□□ -0.62
HDAC6-230ENST00000488543 ZNF367Q7RTV3 350 aa11.16□□□□□ -0.62
HDAC6-230ENST00000488543 OVCH1Q7RTY7 1134 aa11.16□□□□□ -0.62
HDAC6-230ENST00000488543 GALNT6Q8NCL4 622 aa11.16□□□□□ -0.62
HDAC6-230ENST00000488543 TOR1AIP2Q8NFQ8 470 aa11.16□□□□□ -0.62
HDAC6-230ENST00000488543 OR4C3Q8NH37 302 aa11.16□□□□□ -0.62
HDAC6-230ENST00000488543 PIGXQ8TBF5 258 aa11.16□□□□□ -0.62
HDAC6-230ENST00000488543 ASPNQ9BXN1 380 aa11.16□□□□□ -0.62
HDAC6-230ENST00000488543 PLA2G12AQ9BZM1 189 aa11.16□□□□□ -0.62
HDAC6-230ENST00000488543 NXF5Q9H1B4 397 aaKnown RBP11.16□□□□□ -0.62
HDAC6-230ENST00000488543 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.16□□□□□ -0.62
HDAC6-230ENST00000488543 FLRT3Q9NZU0 649 aa11.16□□□□□ -0.62
HDAC6-230ENST00000488543 CNIH4Q9P003 139 aa11.16□□□□□ -0.62
HDAC6-230ENST00000488543 CCDC59Q9P031 241 aaKnown RBP11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms