RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	SPRR3	Q9UBC9	169 aa		7.91	□□□□□ -1.14
USP4-213	ENST00000488520	B4GALT7	Q9UBV7	327 aa		7.91	□□□□□ -1.14
USP4-213	ENST00000488520	SLC13A4	Q9UKG4	626 aa		7.91	□□□□□ -1.14
USP4-213	ENST00000488520	MKLN1	Q9UL63	735 aa		7.91	□□□□□ -1.14
USP4-213	ENST00000488520	ANGPT4	Q9Y264	503 aa		7.91	□□□□□ -1.14
USP4-213	ENST00000488520	IFT52	Q9Y366	437 aa		7.91	□□□□□ -1.14
USP4-213	ENST00000488520	KCNE3	Q9Y6H6	103 aa		7.91	□□□□□ -1.14
USP4-213	ENST00000488520	CR1	P17927	2039 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	RAI1	Q7Z5J4	1906 aa	Predicted RBP	7.9	□□□□□ -1.14
USP4-213	ENST00000488520	FAM47E-STBD1	D6RA91	191 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	SYT5	O00445	386 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	TSPAN2	O60636	221 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	DNAJA2	O60884	412 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	UGT2B11	O75310	529 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	ATE1	O95260	518 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	H6PD	O95479	791 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	BCHE	P06276	602 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	TFPT	P0C1Z6	253 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	CYP4B1	P13584	511 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	GABRA1	P14867	456 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	TBXA2R	P21731	343 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	PTPN6	P29350	595 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	NTF4	P34130	210 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	GCK	P35557	465 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	MAP3K8	P41279	467 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	CASP3	P42574	277 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	AGFG1	P52594	562 aa	Known RBP	7.9	□□□□□ -1.14
USP4-213	ENST00000488520	CDK6	Q00534	326 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	C17orf67	Q0P5P2	114 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	FOXO1	Q12778	655 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	SCARB2	Q14108	478 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	LARS2	Q15031	903 aa	Known RBP	7.9	□□□□□ -1.14
USP4-213	ENST00000488520	TOMM20	Q15388	145 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	SYPL1	Q16563	259 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	ZSWIM7	Q19AV6	140 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	ZBTB37	Q5TC79	503 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	SEM1	Q6ZVN7	128 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	GALNT10	Q86SR1	603 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	SERPINA11	Q86U17	422 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	PRIMA1	Q86XR5	153 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	MISP	Q8IVT2	679 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	DEFB107A	Q8IZN7	70 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	ZNF619	Q8N2I2	560 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	HIPK4	Q8NE63	616 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	OR10G3	Q8NGC4	313 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	OR1J4	Q8NGS1	313 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	BBS10	Q8TAM1	723 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	LINC01560	Q8TB33	94 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	PHOSPHO1	Q8TCT1	267 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	PAQR8	Q8TEZ7	354 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	FAM222B	Q8WU58	562 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	HOXB13	Q92826	284 aa	Predicted RBP	7.9	□□□□□ -1.14
USP4-213	ENST00000488520	CDRT15	Q96T59	188 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	ANGPTL4	Q9BY76	406 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	SLC6A15	Q9H2J7	730 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	TMEM38A	Q9H6F2	299 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	KAT8	Q9H7Z6	458 aa	Known RBP	7.9	□□□□□ -1.14
USP4-213	ENST00000488520	PTGES2	Q9H7Z7	377 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	A4GALT	Q9NPC4	353 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	KLHL28	Q9NXS3	571 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	PPP4R1L	Q9P1A2	415 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	BOK	Q9UMX3	212 aa	Predicted RBP	7.9	□□□□□ -1.14
USP4-213	ENST00000488520	ABCG2	Q9UNQ0	655 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	GMEB1	Q9Y692	573 aa		7.9	□□□□□ -1.14
USP4-213	ENST00000488520	SEC23IP	Q9Y6Y8	1000 aa	Known RBP	7.9	□□□□□ -1.14
USP4-213	ENST00000488520	ROS1	P08922	2347 aa		7.89	□□□□□ -1.15
USP4-213	ENST00000488520	PRR14L	Q5THK1	2151 aa		7.89	□□□□□ -1.15
USP4-213	ENST00000488520	ELOVL7	A1L3X0	281 aa		7.89	□□□□□ -1.15
USP4-213	ENST00000488520	PRORSD1P	A6NEY8	169 aa		7.89	□□□□□ -1.15
USP4-213	ENST00000488520	PRAMEF25	A6NGN4	478 aa		7.89	□□□□□ -1.15
USP4-213	ENST00000488520	TUBAL3	A6NHL2	446 aa		7.89	□□□□□ -1.15
USP4-213	ENST00000488520	HSPB2	A8KAH6	182 aa		7.89	□□□□□ -1.15
USP4-213	ENST00000488520	DVL2	O14641	736 aa		7.89	□□□□□ -1.15
USP4-213	ENST00000488520	SCO2	O43819	266 aa		7.89	□□□□□ -1.15
USP4-213	ENST00000488520	FCMR	O60667	390 aa		7.89	□□□□□ -1.15
USP4-213	ENST00000488520	ICOSLG	O75144	302 aa		7.89	□□□□□ -1.15
USP4-213	ENST00000488520	CBR3	O75828	277 aa		7.89	□□□□□ -1.15
USP4-213	ENST00000488520	CYP7B1	O75881	506 aa		7.89	□□□□□ -1.15
USP4-213	ENST00000488520	UBOX5	O94941	541 aa		7.89	□□□□□ -1.15
USP4-213	ENST00000488520	NUDT14	O95848	222 aa		7.89	□□□□□ -1.15
USP4-213	ENST00000488520	LY6G6D	O95868	133 aa		7.89	□□□□□ -1.15
USP4-213	ENST00000488520	DBI	P07108	87 aa	Known RBP	7.89	□□□□□ -1.15
USP4-213	ENST00000488520	GUSB	P08236	651 aa		7.89	□□□□□ -1.15
USP4-213	ENST00000488520	RFPL3S	P0C7P2	107 aa		7.89	□□□□□ -1.15
USP4-213	ENST00000488520	PCSK6	P29122	969 aa		7.89	□□□□□ -1.15
USP4-213	ENST00000488520	HOXC12	P31275	282 aa		7.89	□□□□□ -1.15
USP4-213	ENST00000488520	EVI2B	P34910	448 aa		7.89	□□□□□ -1.15
USP4-213	ENST00000488520	ASCL1	P50553	236 aa		7.89	□□□□□ -1.15
USP4-213	ENST00000488520	SLC7A2	P52569	658 aa		7.89	□□□□□ -1.15
USP4-213	ENST00000488520	EEFSEC	P57772	596 aa	Known RBP	7.89	□□□□□ -1.15
USP4-213	ENST00000488520	NKX6-1	P78426	367 aa	Predicted RBP	7.89	□□□□□ -1.15
USP4-213	ENST00000488520	SLC25A3	Q00325	362 aa		7.89	□□□□□ -1.15
USP4-213	ENST00000488520	CHRNE	Q04844	493 aa		7.89	□□□□□ -1.15
USP4-213	ENST00000488520	LIPE	Q05469	1076 aa		7.89	□□□□□ -1.15
USP4-213	ENST00000488520	HSPB2	Q16082	182 aa		7.89	□□□□□ -1.15
USP4-213	ENST00000488520	GRAMD1B	Q3KR37	738 aa		7.89	□□□□□ -1.15
USP4-213	ENST00000488520	DNAL1	Q4LDG9	190 aa		7.89	□□□□□ -1.15
USP4-213	ENST00000488520	RABL3	Q5HYI8	236 aa		7.89	□□□□□ -1.15
USP4-213	ENST00000488520	ZNF311	Q5JNZ3	666 aa		7.89	□□□□□ -1.15
USP4-213	ENST00000488520	SAMD4B	Q5PRF9	694 aa	Known RBP	7.89	□□□□□ -1.15

Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms