RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 SEMA4GQ9NTN9 838 aa12.6□□□□□ -0.39
USP42-206ENST00000479544 KCMF1Q9P0J7 381 aa12.6□□□□□ -0.39
USP42-206ENST00000479544 C1orf226A1L170 272 aa12.6□□□□□ -0.39
USP42-206ENST00000479544 PLPP1O14494 284 aa12.6□□□□□ -0.39
USP42-206ENST00000479544 GPR171O14626 319 aa12.6□□□□□ -0.39
USP42-206ENST00000479544 CHP2O43745 196 aa12.6□□□□□ -0.39
USP42-206ENST00000479544 FCMRO60667 390 aa12.6□□□□□ -0.39
USP42-206ENST00000479544 SCGNO76038 276 aa12.6□□□□□ -0.39
USP42-206ENST00000479544 SOD2P04179 222 aa12.6□□□□□ -0.39
USP42-206ENST00000479544 MAKP20794 623 aa12.6□□□□□ -0.39
USP42-206ENST00000479544 PSMA3P25788 255 aa12.6□□□□□ -0.39
USP42-206ENST00000479544 DUSP6Q16828 381 aa12.6□□□□□ -0.39
USP42-206ENST00000479544 CD276Q5ZPR3 534 aa12.6□□□□□ -0.39
USP42-206ENST00000479544 FAM71E1Q6IPT2 247 aa12.6□□□□□ -0.39
USP42-206ENST00000479544 ULK3Q6PHR2 472 aa12.6□□□□□ -0.39
USP42-206ENST00000479544 ZNF584Q8IVC4 421 aa12.6□□□□□ -0.39
USP42-206ENST00000479544 TMIEQ8NEW7 156 aa12.6□□□□□ -0.39
USP42-206ENST00000479544 OR52B4Q8NGK2 314 aa12.6□□□□□ -0.39
USP42-206ENST00000479544 PDXPQ96GD0 296 aa12.6□□□□□ -0.39
USP42-206ENST00000479544 TNFRSF13CQ96RJ3 184 aa12.6□□□□□ -0.39
USP42-206ENST00000479544 NKX3-1Q99801 234 aaPredicted RBP12.6□□□□□ -0.39
USP42-206ENST00000479544 SPATA6Q9NWH7 488 aaPredicted RBP12.6□□□□□ -0.39
USP42-206ENST00000479544 KLK11Q9UBX7 282 aa12.6□□□□□ -0.39
USP42-206ENST00000479544 MRPS33Q9Y291 106 aaKnown RBP12.6□□□□□ -0.39
USP42-206ENST00000479544 BACE2Q9Y5Z0 518 aa12.6□□□□□ -0.39
USP42-206ENST00000479544 V9GY05 133 aa12.6□□□□□ -0.39
USP42-206ENST00000479544 POLR2AP24928 1970 aaKnown RBP12.6□□□□□ -0.39
USP42-206ENST00000479544 TCRBV16S1A1N1A0A5B0 115 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 KRBOX1C9JBD0 128 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 CCSO14618 274 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 SIGLEC5O15389 551 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 CSTAP01040 98 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 MSL3P1P0C860 447 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 SLC6A12P48065 614 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 SIGLEC14Q08ET2 396 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 CHAF1BQ13112 559 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 KIAA1211LQ6NV74 962 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 SLC16A11Q8NCK7 471 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 MAFIPQ8WZ33 124 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 KIAA1143Q96AT1 154 aaPredicted RBP12.59□□□□□ -0.39
USP42-206ENST00000479544 SAMD11Q96NU1 681 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 GRHPRQ9UBQ7 328 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 PLEKHB1Q9UF11 243 aaPredicted RBP12.59□□□□□ -0.39
USP42-206ENST00000479544 COLQQ9Y215 455 aaPredicted RBP12.59□□□□□ -0.39
USP42-206ENST00000479544 TRAPPC4Q9Y296 219 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 ACSM4P0C7M7 580 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 LUMP51884 338 aaPredicted RBP12.59□□□□□ -0.39
USP42-206ENST00000479544 TNFRSF17Q02223 184 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 IRF5Q13568 498 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 EXOSC7Q15024 291 aaKnown RBP12.59□□□□□ -0.39
USP42-206ENST00000479544 RNASE10Q5GAN6 216 aaKnown RBP12.59□□□□□ -0.39
USP42-206ENST00000479544 LCN10Q6JVE6 187 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 NRROSQ86YC3 692 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 C1QTNF7Q9BXJ2 289 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 MTHFD2LQ9H903 347 aaPredicted RBP12.59□□□□□ -0.39
USP42-206ENST00000479544 SPHK2Q9NRA0 654 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 SIDT1Q9NXL6 827 aaKnown RBP12.59□□□□□ -0.39
USP42-206ENST00000479544 TRIM64A6NGJ6 449 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 SSX5O60225 188 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 CLUP10909 449 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 TRAM1Q15629 374 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 SMAD2Q15796 467 aaKnown RBP12.59□□□□□ -0.39
USP42-206ENST00000479544 OCLNQ16625 522 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 LRRC56Q8IYG6 542 aaPredicted RBP12.59□□□□□ -0.39
USP42-206ENST00000479544 LRRC25Q8N386 305 aaPredicted RBP12.59□□□□□ -0.39
USP42-206ENST00000479544 NEURL3Q96EH8 262 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 METTL2AQ96IZ6 378 aaKnown RBP12.59□□□□□ -0.39
USP42-206ENST00000479544 ATF6BQ99941 703 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 SEC61A2Q9H9S3 476 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 PLEKHA1Q9HB21 404 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 FANCFQ9NPI8 374 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 B3GAT2Q9NPZ5 323 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 TM7SF3Q9NS93 570 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 RXFP3Q9NSD7 469 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 DNMT3BQ9UBC3 853 aaKnown RBP12.59□□□□□ -0.39
USP42-206ENST00000479544 CCL27Q9Y4X3 112 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 TMEM129A0AVI4 362 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 ACOT7O00154 380 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 HMGN4O00479 90 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 PRAMEF2O60811 474 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 TIMP2P16035 220 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 B4GALNT1Q00973 533 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 ARHGAP40Q5TG30 622 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 KLHL24Q6TFL4 600 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 ZNF511Q8NB15 262 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 METTL21AQ8WXB1 218 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 FBXW5Q969U6 566 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 TM4SF18Q96CE8 201 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 DERL3Q96Q80 235 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 C1QTNF2Q9BXJ5 285 aa12.59□□□□□ -0.39
USP42-206ENST00000479544 MN1Q10571 1320 aaPredicted RBP12.58□□□□□ -0.39
USP42-206ENST00000479544 H7C1C5 153 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 PPM1BO75688 479 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 PIPP12273 146 aaPredicted RBP12.58□□□□□ -0.4
USP42-206ENST00000479544 RPS27P42677 84 aaKnown RBP12.58□□□□□ -0.4
USP42-206ENST00000479544 RAB5BP61020 215 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 LCN6P62502 163 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 TPBGQ13641 420 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 EIF2B1Q14232 305 aaKnown RBP12.58□□□□□ -0.4
USP42-206ENST00000479544 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.58□□□□□ -0.43e-9■■□□□ 11.4
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms