RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 SLC37A3Q8NCC5 494 aa9□□□□□ -0.97
USP39-214ENST00000474572 C17orf47Q8NEP4 570 aa9□□□□□ -0.97
USP39-214ENST00000474572 OR4C6Q8NH72 309 aa9□□□□□ -0.97
USP39-214ENST00000474572 PTP4A1Q93096 173 aa9□□□□□ -0.97
USP39-214ENST00000474572 CCDC74AQ96AQ1 378 aa9□□□□□ -0.97
USP39-214ENST00000474572 ARSGQ96EG1 525 aa9□□□□□ -0.97
USP39-214ENST00000474572 TNFRSF13CQ96RJ3 184 aa9□□□□□ -0.97
USP39-214ENST00000474572 LMF1Q96S06 567 aa9□□□□□ -0.97
USP39-214ENST00000474572 TIMP4Q99727 224 aa9□□□□□ -0.97
USP39-214ENST00000474572 NUDT22Q9BRQ3 303 aa9□□□□□ -0.97
USP39-214ENST00000474572 TMEM43Q9BTV4 400 aa9□□□□□ -0.97
USP39-214ENST00000474572 NUDT9Q9BW91 350 aa9□□□□□ -0.97
USP39-214ENST00000474572 HCAR1Q9BXC0 346 aa9□□□□□ -0.97
USP39-214ENST00000474572 SMURF1Q9HCE7 757 aa9□□□□□ -0.97
USP39-214ENST00000474572 PNO1Q9NRX1 252 aaKnown RBP9□□□□□ -0.97
USP39-214ENST00000474572 FGF21Q9NSA1 209 aa9□□□□□ -0.97
USP39-214ENST00000474572 ASB6Q9NWX5 421 aa9□□□□□ -0.97
USP39-214ENST00000474572 QPCTLQ9NXS2 382 aa9□□□□□ -0.97
USP39-214ENST00000474572 CRNNQ9UBG3 495 aaPredicted RBP9□□□□□ -0.97
USP39-214ENST00000474572 TNFRSF10DQ9UBN6 386 aa9□□□□□ -0.97
USP39-214ENST00000474572 RPS6KB2Q9UBS0 482 aa9□□□□□ -0.97
USP39-214ENST00000474572 CHRNA9Q9UGM1 479 aa9□□□□□ -0.97
USP39-214ENST00000474572 MRTO4Q9UKD2 239 aaKnown RBP9□□□□□ -0.97
USP39-214ENST00000474572 SRPK3Q9UPE1 567 aa9□□□□□ -0.97
USP39-214ENST00000474572 TRAPPC4Q9Y296 219 aa9□□□□□ -0.97
USP39-214ENST00000474572 EXPH5Q8NEV8 1989 aa9□□□□□ -0.97
USP39-214ENST00000474572 UNC80Q8N2C7 3258 aa9□□□□□ -0.97
USP39-214ENST00000474572 TRAV27A0A087WT01 109 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 PNMA8CA0A1B0GUJ8 204 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 FAM183AA6NL82 134 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 C12orf71A8MTZ7 269 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 SLC30A4O14863 429 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 PLD2O14939 933 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 ARPC3O15145 178 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 OIP5O43482 229 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 AKAP8O43823 692 aaKnown RBP8.99□□□□□ -0.97
USP39-214ENST00000474572 OR7A10O76100 309 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 UTS2O95399 124 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 PPP1R3DO95685 299 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 SBK2P0C263 348 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 PNMTP11086 282 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 UBL4AP11441 157 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 ZNF3P17036 446 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 HK1P19367 917 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 CD53P19397 219 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 PAICSP22234 425 aaKnown RBP8.99□□□□□ -0.97
USP39-214ENST00000474572 S100A5P33763 92 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 PPM1FP49593 454 aaPredicted RBP8.99□□□□□ -0.97
USP39-214ENST00000474572 RORCP51449 518 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 PSPHP78330 225 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 POU4F2Q12837 409 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 CRMP1Q14194 572 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 GALEQ14376 348 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 GGTLC2Q14390 218 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 TBC1D25Q3MII6 688 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 ARHGAP40Q5TG30 622 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 PRAMEF17Q5VTA0 474 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 WBP2NLQ6ICG8 309 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 ZNF322Q6U7Q0 402 aaPredicted RBP8.99□□□□□ -0.97
USP39-214ENST00000474572 APOOLQ6UXV4 268 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 Q7L0L9 218 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 TMPRSS9Q7Z410 1059 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 RABEPKQ7Z6M1 372 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 LHFPL3Q86UP9 236 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 C9orf40Q8IXQ3 194 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 CADM2Q8N3J6 435 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 ACBD7Q8N6N7 88 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 FAM181AQ8N9Y4 354 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 RNF217Q8TC41 542 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 SAP25Q8TEE9 199 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 SPRYD4Q8WW59 207 aaPredicted RBP8.99□□□□□ -0.97
USP39-214ENST00000474572 GATAD2BQ8WXI9 593 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 DAZLQ92904 295 aaKnown RBP8.99□□□□□ -0.97
USP39-214ENST00000474572 SLC25A46Q96AG3 418 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 EFHD2Q96C19 240 aaPredicted RBP8.99□□□□□ -0.97
USP39-214ENST00000474572 SECISBP2Q96T21 854 aaKnown RBP8.99□□□□□ -0.97
USP39-214ENST00000474572 DDOQ99489 341 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 TEAD3Q99594 435 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 IFT27Q9BW83 186 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 C6orf62Q9GZU0 229 aaPredicted RBP8.99□□□□□ -0.97
USP39-214ENST00000474572 LAT2Q9GZY6 243 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 EXOSC4Q9NPD3 245 aaKnown RBP8.99□□□□□ -0.97
USP39-214ENST00000474572 SLC22A11Q9NSA0 550 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 SUSD2Q9UGT4 822 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 KLHL21Q9UJP4 597 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 PILRBQ9UKJ0 227 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 POLHQ9Y253 713 aa8.99□□□□□ -0.97
USP39-214ENST00000474572 YARS2Q9Y2Z4 477 aaKnown RBP8.99□□□□□ -0.97
USP39-214ENST00000474572 HEATR5AQ86XA9 2040 aa8.98□□□□□ -0.97
USP39-214ENST00000474572 SPTBP11277 2137 aa8.98□□□□□ -0.97
USP39-214ENST00000474572 hCG_2014768A0A024R1R8 64 aa8.98□□□□□ -0.97
USP39-214ENST00000474572 C2orf92A0A1B0GVN3 265 aa8.98□□□□□ -0.97
USP39-214ENST00000474572 RIIAD1A6NNX1 92 aa8.98□□□□□ -0.97
USP39-214ENST00000474572 LOC110117498-PIK3R3F6TDL0 507 aa8.98□□□□□ -0.97
USP39-214ENST00000474572 SCDO00767 359 aa8.98□□□□□ -0.97
USP39-214ENST00000474572 ADAM10O14672 748 aa8.98□□□□□ -0.97
USP39-214ENST00000474572 YKT6O15498 198 aa8.98□□□□□ -0.97
USP39-214ENST00000474572 ZNF264O43296 627 aa8.98□□□□□ -0.97
USP39-214ENST00000474572 IFNGP01579 166 aa8.98□□□□□ -0.97
USP39-214ENST00000474572 MYF5P13349 255 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms