RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 POLE3Q9NRF9 147 aa16.67■□□□□ 0.26
CCDC88B-206ENST00000473405 ACER3Q9NUN7 267 aa16.67■□□□□ 0.26
CCDC88B-206ENST00000473405 ADAM11O75078 769 aa16.66■□□□□ 0.26
CCDC88B-206ENST00000473405 FESP07332 822 aa16.66■□□□□ 0.26
CCDC88B-206ENST00000473405 PGCP20142 388 aa16.66■□□□□ 0.26
CCDC88B-206ENST00000473405 IL32P24001 234 aa16.66■□□□□ 0.26
CCDC88B-206ENST00000473405 OR3A2P47893 321 aa16.66■□□□□ 0.26
CCDC88B-206ENST00000473405 DIO1P49895 249 aa16.66■□□□□ 0.26
CCDC88B-206ENST00000473405 KHKP50053 298 aa16.66■□□□□ 0.26
CCDC88B-206ENST00000473405 RASGEF1BQ0VAM2 473 aa16.66■□□□□ 0.26
CCDC88B-206ENST00000473405 STX3Q13277 289 aa16.66■□□□□ 0.26
CCDC88B-206ENST00000473405 P2RY6Q15077 328 aa16.66■□□□□ 0.26
CCDC88B-206ENST00000473405 SYT14P1Q58G82 188 aa16.66■□□□□ 0.26
CCDC88B-206ENST00000473405 ATAD3BQ5T9A4 648 aa16.66■□□□□ 0.26
CCDC88B-206ENST00000473405 ABLIM2Q6H8Q1 611 aa16.66■□□□□ 0.26
CCDC88B-206ENST00000473405 ALKBH2Q6NS38 261 aa16.66■□□□□ 0.26
CCDC88B-206ENST00000473405 HMGN2P46Q86SG4 172 aa16.66■□□□□ 0.26
CCDC88B-206ENST00000473405 KIRREL3Q8IZU9 778 aa16.66■□□□□ 0.26
CCDC88B-206ENST00000473405 ZNF619Q8N2I2 560 aa16.66■□□□□ 0.26
CCDC88B-206ENST00000473405 VPS37AQ8NEZ2 397 aa16.66■□□□□ 0.26
CCDC88B-206ENST00000473405 LILRB1Q8NHL6 650 aaPredicted RBP16.66■□□□□ 0.26
CCDC88B-206ENST00000473405 TMEM171Q8WVE6 324 aa16.66■□□□□ 0.26
CCDC88B-206ENST00000473405 ZNF701Q9NV72 531 aaPredicted RBP16.66■□□□□ 0.26
CCDC88B-206ENST00000473405 MARCOQ9UEW3 520 aaPredicted RBP16.66■□□□□ 0.26
CCDC88B-206ENST00000473405 PRSS50Q9UI38 385 aa16.66■□□□□ 0.26
CCDC88B-206ENST00000473405 SLC35A3Q9Y2D2 325 aa16.66■□□□□ 0.26
CCDC88B-206ENST00000473405 ATRQ13535 2644 aa16.66■□□□□ 0.26
CCDC88B-206ENST00000473405 CLDN24A6NM45 220 aa16.65■□□□□ 0.26
CCDC88B-206ENST00000473405 C9JVG2 144 aa16.65■□□□□ 0.26
CCDC88B-206ENST00000473405 HMGN4O00479 90 aa16.65■□□□□ 0.26
CCDC88B-206ENST00000473405 SDHDO14521 159 aa16.65■□□□□ 0.26
CCDC88B-206ENST00000473405 LY6G6DO95868 133 aa16.65■□□□□ 0.26
CCDC88B-206ENST00000473405 IL12AP29459 219 aa16.65■□□□□ 0.26
CCDC88B-206ENST00000473405 NME5P56597 212 aa16.65■□□□□ 0.26
CCDC88B-206ENST00000473405 ITGADQ13349 1161 aa16.65■□□□□ 0.26
CCDC88B-206ENST00000473405 NCMAPQ5T1S8 102 aa16.65■□□□□ 0.26
CCDC88B-206ENST00000473405 ADAM5Q6NVV9 412 aa16.65■□□□□ 0.26
CCDC88B-206ENST00000473405 ZC3HAV1Q7Z2W4 902 aaKnown RBP16.65■□□□□ 0.26
CCDC88B-206ENST00000473405 LSRQ86X29 649 aaPredicted RBP16.65■□□□□ 0.26
CCDC88B-206ENST00000473405 SLC25A43Q8WUT9 341 aaPredicted RBP16.65■□□□□ 0.26
CCDC88B-206ENST00000473405 TMEM234Q8WY98 164 aa16.65■□□□□ 0.26
CCDC88B-206ENST00000473405 HSD17B8Q92506 261 aa16.65■□□□□ 0.26
CCDC88B-206ENST00000473405 AKAP1Q92667 903 aaKnown RBP eCLIP16.65■□□□□ 0.26
CCDC88B-206ENST00000473405 POTEKPQ9BYX7 375 aa16.65■□□□□ 0.26
CCDC88B-206ENST00000473405 KCNK9Q9NPC2 374 aa16.65■□□□□ 0.26
CCDC88B-206ENST00000473405 AIG1Q9NVV5 245 aa16.65■□□□□ 0.26
CCDC88B-206ENST00000473405 BTNL2Q9UIR0 455 aa16.65■□□□□ 0.26
CCDC88B-206ENST00000473405 SONP18583 2426 aaKnown RBP16.65■□□□□ 0.26
CCDC88B-206ENST00000473405 ZNF724A8MTY0 619 aa16.64■□□□□ 0.25
CCDC88B-206ENST00000473405 S100A3P33764 101 aa16.64■□□□□ 0.25
CCDC88B-206ENST00000473405 CHI3L1P36222 383 aaPredicted RBP16.64■□□□□ 0.25
CCDC88B-206ENST00000473405 WDR4P57081 412 aaKnown RBP16.64■□□□□ 0.25
CCDC88B-206ENST00000473405 UFM1P61960 85 aa16.64■□□□□ 0.25
CCDC88B-206ENST00000473405 CHRNEQ04844 493 aa16.64■□□□□ 0.25
CCDC88B-206ENST00000473405 TMPPEQ6ZT21 453 aa16.64■□□□□ 0.25
CCDC88B-206ENST00000473405 ARL8AQ96BM9 186 aa16.64■□□□□ 0.25
CCDC88B-206ENST00000473405 ZNF775Q96BV0 537 aaPredicted RBP16.64■□□□□ 0.25
CCDC88B-206ENST00000473405 BDH2Q9BUT1 245 aa16.64■□□□□ 0.25
CCDC88B-206ENST00000473405 CXorf56Q9H5V9 222 aa16.64■□□□□ 0.25
CCDC88B-206ENST00000473405 EXOSC3Q9NQT5 275 aaKnown RBP16.64■□□□□ 0.25
CCDC88B-206ENST00000473405 CTPS2Q9NRF8 586 aa16.64■□□□□ 0.25
CCDC88B-206ENST00000473405 SERINC1Q9NRX5 453 aa16.64■□□□□ 0.25
CCDC88B-206ENST00000473405 CHRNA9Q9UGM1 479 aa16.64■□□□□ 0.25
CCDC88B-206ENST00000473405 RNF115Q9Y4L5 304 aa16.64■□□□□ 0.25
CCDC88B-206ENST00000473405 IGKV3D-15A0A087WSY6 115 aa16.63■□□□□ 0.25
CCDC88B-206ENST00000473405 ZNF716A6NP11 495 aa16.63■□□□□ 0.25
CCDC88B-206ENST00000473405 FAM171A2A8MVW0 826 aa16.63■□□□□ 0.25
CCDC88B-206ENST00000473405 SULT2B1O00204 365 aa16.63■□□□□ 0.25
CCDC88B-206ENST00000473405 ZNF500O60304 480 aaPredicted RBP16.63■□□□□ 0.25
CCDC88B-206ENST00000473405 TMCC2O75069 709 aa16.63■□□□□ 0.25
CCDC88B-206ENST00000473405 LYZL6O75951 148 aa16.63■□□□□ 0.25
CCDC88B-206ENST00000473405 COX5AP20674 150 aa16.63■□□□□ 0.25
CCDC88B-206ENST00000473405 APOBEC1P41238 236 aaKnown RBP16.63■□□□□ 0.25
CCDC88B-206ENST00000473405 CDKN2CP42773 168 aa16.63■□□□□ 0.25
CCDC88B-206ENST00000473405 SYPL1Q16563 259 aa16.63■□□□□ 0.25
CCDC88B-206ENST00000473405 BHLHA15Q7RTS1 189 aaPredicted RBP16.63■□□□□ 0.25
CCDC88B-206ENST00000473405 RNF130Q86XS8 419 aa16.63■□□□□ 0.25
CCDC88B-206ENST00000473405 ANKFN1Q8N957 763 aa16.63■□□□□ 0.25
CCDC88B-206ENST00000473405 ARL5BQ96KC2 179 aa16.63■□□□□ 0.25
CCDC88B-206ENST00000473405 INPP5KQ9BT40 448 aa16.63■□□□□ 0.25
CCDC88B-206ENST00000473405 SLC38A1Q9H2H9 487 aa16.63■□□□□ 0.25
CCDC88B-206ENST00000473405 ESRP2Q9H6T0 727 aaKnown RBP16.63■□□□□ 0.25
CCDC88B-206ENST00000473405 GPR45Q9Y5Y3 372 aa16.63■□□□□ 0.25
CCDC88B-206ENST00000473405 SMAD7O15105 426 aaKnown RBP16.62■□□□□ 0.25
CCDC88B-206ENST00000473405 CLOCKO15516 846 aa16.62■□□□□ 0.25
CCDC88B-206ENST00000473405 SNNO75324 88 aaPredicted RBP16.62■□□□□ 0.25
CCDC88B-206ENST00000473405 CNOT4O95628 575 aaKnown RBP16.62■□□□□ 0.25
CCDC88B-206ENST00000473405 PGRP06401 933 aa16.62■□□□□ 0.25
CCDC88B-206ENST00000473405 CD3EP07766 207 aa16.62■□□□□ 0.25
CCDC88B-206ENST00000473405 CHRM4P08173 479 aa16.62■□□□□ 0.25
CCDC88B-206ENST00000473405 IGHV1-2P23083 117 aa16.62■□□□□ 0.25
CCDC88B-206ENST00000473405 EPHA3P29320 983 aa16.62■□□□□ 0.25
CCDC88B-206ENST00000473405 RYKP34925 604 aa16.62■□□□□ 0.25
CCDC88B-206ENST00000473405 CSNK2A1P68400 391 aaPredicted RBP16.62■□□□□ 0.25
CCDC88B-206ENST00000473405 KCNJ10P78508 379 aa16.62■□□□□ 0.25
CCDC88B-206ENST00000473405 HPCAP84074 193 aa16.62■□□□□ 0.25
CCDC88B-206ENST00000473405 BSPH1Q075Z2 132 aa16.62■□□□□ 0.25
CCDC88B-206ENST00000473405 CAPRIN1Q14444 709 aaKnown RBP16.62■□□□□ 0.25
CCDC88B-206ENST00000473405 GPAT3Q53EU6 434 aa16.62■□□□□ 0.25
CCDC88B-206ENST00000473405 GRINAQ7Z429 371 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms