RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	CADM2	Q8N3J6	435 aa		10.31	□□□□□ -0.76
CPNE1-222	ENST00000473373	OR52P1P	Q8NH57	321 aa		10.31	□□□□□ -0.76
CPNE1-222	ENST00000473373	ABHD3	Q8WU67	409 aa		10.31	□□□□□ -0.76
CPNE1-222	ENST00000473373	SLC25A43	Q8WUT9	341 aa	Predicted RBP	10.31	□□□□□ -0.76
CPNE1-222	ENST00000473373	CKAP2	Q8WWK9	683 aa		10.31	□□□□□ -0.76
CPNE1-222	ENST00000473373	NRGN	Q92686	78 aa		10.31	□□□□□ -0.76
CPNE1-222	ENST00000473373	SRXN1	Q9BYN0	137 aa		10.31	□□□□□ -0.76
CPNE1-222	ENST00000473373	SLC38A1	Q9H2H9	487 aa		10.31	□□□□□ -0.76
CPNE1-222	ENST00000473373	RABEP2	Q9H5N1	569 aa		10.31	□□□□□ -0.76
CPNE1-222	ENST00000473373	CTPS2	Q9NRF8	586 aa		10.31	□□□□□ -0.76
CPNE1-222	ENST00000473373	KLHL9	Q9P2J3	617 aa		10.31	□□□□□ -0.76
CPNE1-222	ENST00000473373	KCNE5	Q9UJ90	142 aa		10.31	□□□□□ -0.76
CPNE1-222	ENST00000473373	AKAP6	Q13023	2319 aa		10.31	□□□□□ -0.76
CPNE1-222	ENST00000473373	ITPR3	Q14573	2671 aa		10.31	□□□□□ -0.76
CPNE1-222	ENST00000473373	CCDC168	Q8NDH2	2452 aa		10.31	□□□□□ -0.76
CPNE1-222	ENST00000473373	CFAP73	A6NFT4	308 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	EVPLL	A8MZ36	301 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	ANGPT2	O15123	496 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	C1QC	P02747	245 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	ZCCHC18	P0CG32	403 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	TROVE2	P10155	538 aa	Known RBP eCLIP	10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	PPIB	P23284	216 aa	Known RBP	10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	AGTR1	P30556	359 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	UGT2B10	P36537	528 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	MAGEA8	P43361	318 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	HTR3A	P46098	478 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	ART1	P52961	327 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	OR2B6	P58173	313 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	RAC3	P60763	192 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	RASGEF1B	Q0VAM2	473 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	KRTAP21-3	Q3LHN1	58 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	SYT14P1	Q58G82	188 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	SLC25A53	Q5H9E4	307 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	RPS26P11	Q5JNZ5	115 aa	Predicted RBP	10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	ZNF474	Q6S9Z5	364 aa	Predicted RBP	10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	VRK2	Q86Y07	508 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	CDC20B	Q86Y33	519 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	TUSC5	Q8IXB3	177 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	CNOT9	Q92600	299 aa	Known RBP	10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	DDIT4L	Q96D03	193 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	ZG16B	Q96DA0	208 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	PIK3IP1	Q96FE7	263 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	POM121	Q96HA1	1249 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	TMEM19	Q96HH6	336 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	ADGRG7	Q96K78	797 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	TACO1	Q9BSH4	297 aa	Known RBP	10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	SAP130	Q9H0E3	1048 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	EXOSC3	Q9NQT5	275 aa	Known RBP	10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	SLC6A13	Q9NSD5	602 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	ACER3	Q9NUN7	267 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	RPS6KB2	Q9UBS0	482 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	CHRNA9	Q9UGM1	479 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	SLC13A4	Q9UKG4	626 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	CORO2B	Q9UQ03	480 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	PLEKHA6	Q9Y2H5	1048 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	PCDHB14	Q9Y5E9	798 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	ZFHX3	Q15911	3703 aa		10.3	□□□□□ -0.76
CPNE1-222	ENST00000473373	DSCAM	O60469	2012 aa		10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373		A0A096LPI6	279 aa		10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	AGAP5	A6NIR3	686 aa		10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	AP3D1	O14617	1153 aa		10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	GOSR1	O95249	250 aa		10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	FES	P07332	822 aa		10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	GUSB	P08236	651 aa		10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	GKN3P	P0CG01	181 aa		10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	NID1	P14543	1247 aa		10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	IL32	P24001	234 aa		10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	CXCR1	P25024	350 aa		10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	DNAJA1	P31689	397 aa	Known RBP	10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	DIO1	P49895	249 aa		10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	POLR2H	P52434	150 aa	Known RBP	10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	NCALD	P61601	193 aa		10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	IRX1	P78414	480 aa	Predicted RBP	10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	SF3A3	Q12874	501 aa	Known RBP eCLIP	10.29	□□□□□ -0.76	8e-31	■■■□□ 14.8
CPNE1-222	ENST00000473373	FADD	Q13158	208 aa		10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	DAZAP2	Q15038	168 aa	Predicted RBP	10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	RGN	Q15493	299 aa		10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	ZNF311	Q5JNZ3	666 aa		10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	KRT73	Q86Y46	540 aa		10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	WFDC8	Q8IUA0	241 aa		10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	ZNF100	Q8IYN0	542 aa		10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	UBE2J2	Q8N2K1	259 aa		10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	RNF217	Q8TC41	542 aa		10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	RNF128	Q8TEB7	428 aa		10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	GTF2H4	Q92759	462 aa		10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	PMM1	Q92871	262 aa		10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	WFIKKN1	Q96NZ8	548 aa		10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	COQ10B	Q9H8M1	238 aa		10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	EMC3	Q9P0I2	261 aa		10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	C6orf203	Q9P0P8	240 aa	Predicted RBP	10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	KLHL13	Q9P2N7	655 aa		10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	ZNF443	Q9Y2A4	671 aa	Predicted RBP	10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	IFT52	Q9Y366	437 aa		10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	TESMIN	Q9Y4I5	508 aa		10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	ABCA4	P78363	2273 aa		10.29	□□□□□ -0.76
CPNE1-222	ENST00000473373	MED13L	Q71F56	2210 aa		10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	TMED7-TICAM2	A0A0A6YYA0	188 aa		10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373		A0A0G2JPF8	293 aa		10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	PRAMEF27	A3QJZ7	478 aa		10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	HNRNPCL2	B2RXH8	293 aa		10.28	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms