RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 CTPS2Q9NRF8 586 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 SERINC1Q9NRX5 453 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 PACSIN3Q9UKS6 424 aa10.76□□□□□ -0.69
VPS13D-204ENST00000469054 A0A0J9YW62 118 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 WIPF3A6NGB9 483 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 CD8B2A6NJW9 211 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 CLCA1A8K7I4 914 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 EIF1AYO14602 144 aaKnown RBP10.75□□□□□ -0.69
VPS13D-204ENST00000469054 ADAMDEC1O15204 470 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 GSTA4O15217 222 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 LDLRP01130 860 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 GLI4P10075 376 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 HSD17B1P14061 328 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 GGT1P19440 569 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 HTR1EP28566 365 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 SHC1P29353 583 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 TACR3P29371 465 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 SFTPDP35247 375 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 POLR2HP52434 150 aaKnown RBP10.75□□□□□ -0.69
VPS13D-204ENST00000469054 ZNF136P52737 540 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 NUP107P57740 925 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 RGS8P57771 180 aaPredicted RBP10.75□□□□□ -0.69
VPS13D-204ENST00000469054 ADORA2A-AS1P86434 159 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 PMPCAQ10713 525 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 CTU2Q2VPK5 515 aaKnown RBP10.75□□□□□ -0.69
VPS13D-204ENST00000469054 LRRC23Q53EV4 343 aaPredicted RBP10.75□□□□□ -0.69
VPS13D-204ENST00000469054 PDSS1Q5T2R2 415 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 C3orf33Q6P1S2 294 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 POMZP3Q6PJE2 187 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 SEM1Q6ZVN7 128 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 LACC1Q8IV20 430 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 RNF148Q8N7C7 305 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 ATP6V1C2Q8NEY4 427 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 RND1Q92730 232 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 HS3ST6Q96QI5 342 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 UCN2Q96RP3 112 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 TRIB1Q96RU8 372 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 C1orf21Q9H246 121 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 CHRNA9Q9UGM1 479 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 CD300AQ9UGN4 299 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 OSGIN1Q9UJX0 560 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 BAG5Q9UL15 447 aa10.75□□□□□ -0.69
VPS13D-204ENST00000469054 TMED7-TICAM2A0A0A6YYA0 188 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 TMEM229AB2RXF0 380 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 KDM4EB2RXH2 506 aaPredicted RBP10.74□□□□□ -0.69
VPS13D-204ENST00000469054 M0R3H8 397 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 TNFSF11O14788 317 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 TPST2O60704 377 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 ZG16O60844 167 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 TCN1P20061 433 aaPredicted RBP10.74□□□□□ -0.69
VPS13D-204ENST00000469054 CCNA2P20248 432 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 FKBP2P26885 142 aaKnown RBP10.74□□□□□ -0.69
VPS13D-204ENST00000469054 HTR2AP28223 471 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 TIMP3P35625 211 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 EIF1AXP47813 144 aaKnown RBP10.74□□□□□ -0.69
VPS13D-204ENST00000469054 MAP2K6P52564 334 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 SMSP52788 366 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 NCALDP61601 193 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 SELENOWP63302 87 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 SGCBQ16585 318 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 FXNQ16595 210 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 NRF1Q16656 503 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 SPATS1Q496A3 300 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 CYBRD1Q53TN4 286 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 HBMQ6B0K9 141 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 GLYATQ6IB77 296 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 CBLL1Q75N03 491 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 ARHGAP24Q8N264 748 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 LSMEM1Q8N8F7 131 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 FAM156AQ8NDB6 213 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 OR52E4Q8NGH9 312 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 OR6T1Q8NGN1 323 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 OR10D3Q8NH80 312 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 OR2V1Q8NHB1 315 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 SSC4DQ8WTU2 575 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 SLC25A43Q8WUT9 341 aaPredicted RBP10.74□□□□□ -0.69
VPS13D-204ENST00000469054 PROX1Q92786 737 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 OSTF1Q92882 214 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 ZNF845Q96IR2 970 aaPredicted RBP10.74□□□□□ -0.69
VPS13D-204ENST00000469054 ZNF559Q9BR84 538 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 PRR14Q9BWN1 585 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 TRIM2Q9C040 744 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 TMEM27Q9HBJ8 222 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 PAQR5Q9NXK6 330 aaPredicted RBP10.74□□□□□ -0.69
VPS13D-204ENST00000469054 TAS2R1Q9NYW7 299 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 CLCF1Q9UBD9 225 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 TESQ9UGI8 421 aaKnown RBP10.74□□□□□ -0.69
VPS13D-204ENST00000469054 EGFL7Q9UHF1 273 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 SLC9A8Q9Y2E8 581 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 TMED7Q9Y3B3 224 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 SPIN1Q9Y657 262 aaPredicted RBP10.74□□□□□ -0.69
VPS13D-204ENST00000469054 MED12Q93074 2177 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 PCNX3Q9H6A9 2034 aa10.74□□□□□ -0.69
VPS13D-204ENST00000469054 GTF3C1Q12789 2109 aa10.73□□□□□ -0.69
VPS13D-204ENST00000469054 TMEM72A0PK05 275 aa10.73□□□□□ -0.69
VPS13D-204ENST00000469054 MBD3L4A6NDZ8 208 aaPredicted RBP10.73□□□□□ -0.69
VPS13D-204ENST00000469054 MBD3L3A6NE82 208 aaPredicted RBP10.73□□□□□ -0.69
VPS13D-204ENST00000469054 MBD3L5A6NJ08 208 aaPredicted RBP10.73□□□□□ -0.69
VPS13D-204ENST00000469054 ZNF208O43345 1280 aa10.73□□□□□ -0.69
VPS13D-204ENST00000469054 FMO6PO60774 539 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms