RNA–Protein interactions for RNA: ENST00000449744.1

CHD3-205, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 880 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-205ENST00000449744 ZIM2Q9NZV7 527 aa13.6□□□□□ -0.23
CHD3-205ENST00000449744 HEATR5AQ86XA9 2040 aa13.59□□□□□ -0.23
CHD3-205ENST00000449744 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.59□□□□□ -0.23
CHD3-205ENST00000449744 PRAMEF27A3QJZ7 478 aa13.59□□□□□ -0.23
CHD3-205ENST00000449744 CLDN24A6NM45 220 aa13.59□□□□□ -0.23
CHD3-205ENST00000449744 SULT2B1O00204 365 aa13.59□□□□□ -0.23
CHD3-205ENST00000449744 BCAS1O75363 584 aaPredicted RBP13.59□□□□□ -0.23
CHD3-205ENST00000449744 C1QCP02747 245 aa13.59□□□□□ -0.23
CHD3-205ENST00000449744 THBDP07204 575 aa13.59□□□□□ -0.23
CHD3-205ENST00000449744 IL7RP16871 459 aa13.59□□□□□ -0.23
CHD3-205ENST00000449744 IL32P24001 234 aa13.59□□□□□ -0.23
CHD3-205ENST00000449744 DIO1P49895 249 aa13.59□□□□□ -0.23
CHD3-205ENST00000449744 ADAM8P78325 824 aa13.59□□□□□ -0.23
CHD3-205ENST00000449744 FOXD4Q12950 439 aaPredicted RBP13.59□□□□□ -0.23
CHD3-205ENST00000449744 SYT14P1Q58G82 188 aa13.59□□□□□ -0.23
CHD3-205ENST00000449744 ALKBH2Q6NS38 261 aa13.59□□□□□ -0.23
CHD3-205ENST00000449744 TFAP2EQ6VUC0 442 aa13.59□□□□□ -0.23
CHD3-205ENST00000449744 TMPPEQ6ZT21 453 aa13.59□□□□□ -0.23
CHD3-205ENST00000449744 CXorf67Q86X51 503 aaPredicted RBP13.59□□□□□ -0.23
CHD3-205ENST00000449744 CMIPQ8IY22 773 aa13.59□□□□□ -0.23
CHD3-205ENST00000449744 WDR60Q8WVS4 1066 aa13.59□□□□□ -0.23
CHD3-205ENST00000449744 ZHX1-C8orf76Q96EF9 292 aa13.59□□□□□ -0.23
CHD3-205ENST00000449744 HS3ST6Q96QI5 342 aa13.59□□□□□ -0.23
CHD3-205ENST00000449744 OR52B2Q96RD2 323 aa13.59□□□□□ -0.23
CHD3-205ENST00000449744 PSD2Q9BQI7 771 aa13.59□□□□□ -0.23
CHD3-205ENST00000449744 SLC38A1Q9H2H9 487 aa13.59□□□□□ -0.23
CHD3-205ENST00000449744 MTHFD2LQ9H903 347 aaPredicted RBP13.59□□□□□ -0.23
CHD3-205ENST00000449744 BCO1Q9HAY6 547 aa13.59□□□□□ -0.23
CHD3-205ENST00000449744 CTPS2Q9NRF8 586 aa13.59□□□□□ -0.23
CHD3-205ENST00000449744 CHRNA9Q9UGM1 479 aa13.59□□□□□ -0.23
CHD3-205ENST00000449744 USH1CQ9Y6N9 552 aa13.59□□□□□ -0.23
CHD3-205ENST00000449744 AGAP5A6NIR3 686 aa13.58□□□□□ -0.24
CHD3-205ENST00000449744 SMAD9O15198 467 aaKnown RBP13.58□□□□□ -0.24
CHD3-205ENST00000449744 CYTIPO60759 359 aa13.58□□□□□ -0.24
CHD3-205ENST00000449744 SMPD2O60906 423 aa13.58□□□□□ -0.24
CHD3-205ENST00000449744 DBIP07108 87 aaKnown RBP13.58□□□□□ -0.24
CHD3-205ENST00000449744 FESP07332 822 aa13.58□□□□□ -0.24
CHD3-205ENST00000449744 CHRM4P08173 479 aa13.58□□□□□ -0.24
CHD3-205ENST00000449744 UQCRBP14927 111 aa13.58□□□□□ -0.24
CHD3-205ENST00000449744 FKBP2P26885 142 aaKnown RBP13.58□□□□□ -0.24
CHD3-205ENST00000449744 CRATP43155 626 aa13.58□□□□□ -0.24
CHD3-205ENST00000449744 MAGEA8P43361 318 aa13.58□□□□□ -0.24
CHD3-205ENST00000449744 IDH2P48735 452 aaKnown RBP13.58□□□□□ -0.24
CHD3-205ENST00000449744 POLR2JP52435 117 aaKnown RBP13.58□□□□□ -0.24
CHD3-205ENST00000449744 NR1H2P55055 460 aa13.58□□□□□ -0.24
CHD3-205ENST00000449744 NKX6-1P78426 367 aaPredicted RBP13.58□□□□□ -0.24
CHD3-205ENST00000449744 COX20Q5RI15 118 aa13.58□□□□□ -0.24
CHD3-205ENST00000449744 MAVSQ7Z434 540 aa13.58□□□□□ -0.24
CHD3-205ENST00000449744 P3H2Q8IVL5 708 aa13.58□□□□□ -0.24
CHD3-205ENST00000449744 GABRG1Q8N1C3 465 aa13.58□□□□□ -0.24
CHD3-205ENST00000449744 MIER2Q8N344 545 aa13.58□□□□□ -0.24
CHD3-205ENST00000449744 LRRC8CQ8TDW0 803 aa13.58□□□□□ -0.24
CHD3-205ENST00000449744 CNOT9Q92600 299 aaKnown RBP13.58□□□□□ -0.24
CHD3-205ENST00000449744 PMM1Q92871 262 aa13.58□□□□□ -0.24
CHD3-205ENST00000449744 S100PBPQ96BU1 408 aa13.58□□□□□ -0.24
CHD3-205ENST00000449744 ITCHQ96J02 903 aa13.58□□□□□ -0.24
CHD3-205ENST00000449744 CCL19Q99731 98 aa13.58□□□□□ -0.24
CHD3-205ENST00000449744 PIP5K1AQ99755 562 aa13.58□□□□□ -0.24
CHD3-205ENST00000449744 CCDC106Q9BWC9 280 aa13.58□□□□□ -0.24
CHD3-205ENST00000449744 SDR39U1Q9NRG7 319 aaPredicted RBP13.58□□□□□ -0.24
CHD3-205ENST00000449744 P2RX2Q9UBL9 471 aa13.58□□□□□ -0.24
CHD3-205ENST00000449744 AKAP9Q99996 3911 aa13.58□□□□□ -0.24
CHD3-205ENST00000449744 ARHGEF9O43307 516 aa13.57□□□□□ -0.24
CHD3-205ENST00000449744 KLF4O43474 513 aa13.57□□□□□ -0.24
CHD3-205ENST00000449744 GCM2O75603 506 aaPredicted RBP13.57□□□□□ -0.24
CHD3-205ENST00000449744 ADAP00813 363 aa13.57□□□□□ -0.24
CHD3-205ENST00000449744 ZCCHC18P0CG32 403 aa13.57□□□□□ -0.24
CHD3-205ENST00000449744 CCNA2P20248 432 aa13.57□□□□□ -0.24
CHD3-205ENST00000449744 HTR3AP46098 478 aa13.57□□□□□ -0.24
CHD3-205ENST00000449744 STX1BP61266 288 aa13.57□□□□□ -0.24
CHD3-205ENST00000449744 P2RY6Q15077 328 aa13.57□□□□□ -0.24
CHD3-205ENST00000449744 C6orf10Q5SRN2 563 aa13.57□□□□□ -0.24
CHD3-205ENST00000449744 SFRP5Q5T4F7 317 aa13.57□□□□□ -0.24
CHD3-205ENST00000449744 SHEQ5VZ18 495 aa13.57□□□□□ -0.24
CHD3-205ENST00000449744 C20orf204Q6ZNR8 217 aa13.57□□□□□ -0.24
CHD3-205ENST00000449744 MSANTD1Q6ZTZ1 278 aa13.57□□□□□ -0.24
CHD3-205ENST00000449744 MTDHQ86UE4 582 aaKnown RBP13.57□□□□□ -0.24
CHD3-205ENST00000449744 PEX5LQ8IYB4 626 aa13.57□□□□□ -0.24
CHD3-205ENST00000449744 ZNF100Q8IYN0 542 aa13.57□□□□□ -0.24
CHD3-205ENST00000449744 KISS1RQ969F8 398 aaPredicted RBP13.57□□□□□ -0.24
CHD3-205ENST00000449744 ZNF775Q96BV0 537 aaPredicted RBP13.57□□□□□ -0.24
CHD3-205ENST00000449744 PLPPR2Q96GM1 343 aa13.57□□□□□ -0.24
CHD3-205ENST00000449744 ZNF300Q96RE9 604 aaPredicted RBP13.57□□□□□ -0.24
CHD3-205ENST00000449744 CACYBPQ9HB71 228 aaKnown RBP13.57□□□□□ -0.24
CHD3-205ENST00000449744 NGBQ9NPG2 151 aa13.57□□□□□ -0.24
CHD3-205ENST00000449744 CALML5Q9NZT1 146 aa13.57□□□□□ -0.24
CHD3-205ENST00000449744 EMC3Q9P0I2 261 aa13.57□□□□□ -0.24
CHD3-205ENST00000449744 HDGFL3Q9Y3E1 203 aa13.57□□□□□ -0.24
CHD3-205ENST00000449744 TMEM247A6NEH6 219 aa13.56□□□□□ -0.24
CHD3-205ENST00000449744 ZNF724A8MTY0 619 aa13.56□□□□□ -0.24
CHD3-205ENST00000449744 AP3D1O14617 1153 aa13.56□□□□□ -0.24
CHD3-205ENST00000449744 POLR3GO15318 223 aaPredicted RBP13.56□□□□□ -0.24
CHD3-205ENST00000449744 ETFAP13804 333 aa13.56□□□□□ -0.24
CHD3-205ENST00000449744 LOXP28300 417 aaPredicted RBP13.56□□□□□ -0.24
CHD3-205ENST00000449744 OR3A2P47893 321 aa13.56□□□□□ -0.24
CHD3-205ENST00000449744 CLK1P49759 484 aaKnown RBP13.56□□□□□ -0.24
CHD3-205ENST00000449744 POLR2HP52434 150 aaKnown RBP13.56□□□□□ -0.24
CHD3-205ENST00000449744 CRISP3P54108 245 aa13.56□□□□□ -0.24
CHD3-205ENST00000449744 DSTNP60981 165 aa13.56□□□□□ -0.24
CHD3-205ENST00000449744 ITGADQ13349 1161 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms