RNA–Protein interactions for RNA: ENST00000449264.2

TNF-208, Transcript of tumor necrosis factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNF, Length 1,676 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNF-208ENST00000449264 TP53TG5Q9Y2B4 290 aa13.28□□□□□ -0.28
TNF-208ENST00000449264 C15orf41Q9Y2V0 281 aa13.28□□□□□ -0.28
TNF-208ENST00000449264 PRRC2CQ9Y520 2896 aaKnown RBP13.28□□□□□ -0.28
TNF-208ENST00000449264 ELOA3DA6NLF2 546 aaPredicted RBP13.28□□□□□ -0.28
TNF-208ENST00000449264 FAM166BA8MTA8 275 aa13.28□□□□□ -0.28
TNF-208ENST00000449264 KPNA4O00629 521 aaPredicted RBP13.28□□□□□ -0.28
TNF-208ENST00000449264 CBR3O75828 277 aa13.28□□□□□ -0.28
TNF-208ENST00000449264 CCNB2O95067 398 aa13.28□□□□□ -0.28
TNF-208ENST00000449264 LYPD3O95274 346 aa13.28□□□□□ -0.28
TNF-208ENST00000449264 WISP1O95388 367 aa13.28□□□□□ -0.28
TNF-208ENST00000449264 RFPL3SP0C7P2 107 aa13.28□□□□□ -0.28
TNF-208ENST00000449264 FAM87AP0C7U9 286 aa13.28□□□□□ -0.28
TNF-208ENST00000449264 THRBP10828 461 aa13.28□□□□□ -0.28
TNF-208ENST00000449264 CCNA2P20248 432 aa13.28□□□□□ -0.28
TNF-208ENST00000449264 GDF1P27539 372 aa13.28□□□□□ -0.28
TNF-208ENST00000449264 LIMS1P48059 325 aa13.28□□□□□ -0.28
TNF-208ENST00000449264 FOXO1Q12778 655 aa13.28□□□□□ -0.28
TNF-208ENST00000449264 ELOA3BQ3SY89 546 aa13.28□□□□□ -0.28
TNF-208ENST00000449264 TBPL2Q6SJ96 375 aa13.28□□□□□ -0.28
TNF-208ENST00000449264 ZNF730Q6ZMV8 503 aa13.28□□□□□ -0.28
TNF-208ENST00000449264 GRINAQ7Z429 371 aa13.28□□□□□ -0.28
TNF-208ENST00000449264 P3H2Q8IVL5 708 aa13.28□□□□□ -0.28
TNF-208ENST00000449264 SVOPLQ8N434 492 aa13.28□□□□□ -0.28
TNF-208ENST00000449264 CBR4Q8N4T8 237 aa13.28□□□□□ -0.28
TNF-208ENST00000449264 ELOA3Q8NG57 546 aa13.28□□□□□ -0.28
TNF-208ENST00000449264 OR10G2Q8NGC3 310 aa13.28□□□□□ -0.28
TNF-208ENST00000449264 OR9Q2Q8NGE9 314 aa13.28□□□□□ -0.28
TNF-208ENST00000449264 OR5M1Q8NGP8 315 aa13.28□□□□□ -0.28
TNF-208ENST00000449264 PRSS27Q9BQR3 290 aa13.28□□□□□ -0.28
TNF-208ENST00000449264 MFRPQ9BY79 579 aa13.28□□□□□ -0.28
TNF-208ENST00000449264 TTTY12Q9BZ98 90 aa13.28□□□□□ -0.28
TNF-208ENST00000449264 B4GALT7Q9UBV7 327 aa13.28□□□□□ -0.28
TNF-208ENST00000449264 RPH3AQ9Y2J0 694 aaPredicted RBP13.28□□□□□ -0.28
TNF-208ENST00000449264 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.27□□□□□ -0.29
TNF-208ENST00000449264 CASQ2O14958 399 aaPredicted RBP13.27□□□□□ -0.29
TNF-208ENST00000449264 PIP5K1CO60331 668 aa13.27□□□□□ -0.29
TNF-208ENST00000449264 OR10H3O60404 316 aa13.27□□□□□ -0.29
TNF-208ENST00000449264 TRAPPC6AO75865 159 aa13.27□□□□□ -0.29
TNF-208ENST00000449264 HK1P19367 917 aa13.27□□□□□ -0.29
TNF-208ENST00000449264 PRKACGP22612 351 aa13.27□□□□□ -0.29
TNF-208ENST00000449264 POLR2HP52434 150 aaKnown RBP13.27□□□□□ -0.29
TNF-208ENST00000449264 DSCR4P56555 118 aaPredicted RBP13.27□□□□□ -0.29
TNF-208ENST00000449264 LSM11P83369 360 aaKnown RBP eCLIP13.27□□□□□ -0.29
TNF-208ENST00000449264 PMP22Q01453 160 aa13.27□□□□□ -0.29
TNF-208ENST00000449264 SWT1Q5T5J6 900 aaKnown RBP13.27□□□□□ -0.29
TNF-208ENST00000449264 RAET1LQ5VY80 246 aa13.27□□□□□ -0.29
TNF-208ENST00000449264 IGFL3Q6UXB1 125 aa13.27□□□□□ -0.29
TNF-208ENST00000449264 ATG4DQ86TL0 474 aaPredicted RBP13.27□□□□□ -0.29
TNF-208ENST00000449264 HIPK1Q86Z02 1210 aa13.27□□□□□ -0.29
TNF-208ENST00000449264 GIPC3Q8TF64 312 aa13.27□□□□□ -0.29
TNF-208ENST00000449264 RELTQ969Z4 430 aa13.27□□□□□ -0.29
TNF-208ENST00000449264 C9orf16Q9BUW7 83 aa13.27□□□□□ -0.29
TNF-208ENST00000449264 ANKRD19PQ9H560 264 aa13.27□□□□□ -0.29
TNF-208ENST00000449264 KIF17Q9P2E2 1029 aa13.27□□□□□ -0.29
TNF-208ENST00000449264 OSGIN1Q9UJX0 560 aa13.27□□□□□ -0.29
TNF-208ENST00000449264 ZMIZ1Q9ULJ6 1067 aa13.27□□□□□ -0.29
TNF-208ENST00000449264 TLN1Q9Y490 2541 aaKnown RBP13.26□□□□□ -0.29
TNF-208ENST00000449264 A0A087WUU8 490 aa13.26□□□□□ -0.29
TNF-208ENST00000449264 SH3PXD2BA1X283 911 aa13.26□□□□□ -0.29
TNF-208ENST00000449264 SOCS2O14508 198 aa13.26□□□□□ -0.29
TNF-208ENST00000449264 EI24O14681 340 aa13.26□□□□□ -0.29
TNF-208ENST00000449264 PNMTP11086 282 aa13.26□□□□□ -0.29
TNF-208ENST00000449264 CXCR1P25024 350 aa13.26□□□□□ -0.29
TNF-208ENST00000449264 SRD5A2P31213 254 aa13.26□□□□□ -0.29
TNF-208ENST00000449264 HMGA2P52926 109 aa13.26□□□□□ -0.29
TNF-208ENST00000449264 UGT2B15P54855 530 aa13.26□□□□□ -0.29
TNF-208ENST00000449264 FOXK1P85037 733 aa13.26□□□□□ -0.29
TNF-208ENST00000449264 ZNF169Q14929 603 aaPredicted RBP13.26□□□□□ -0.29
TNF-208ENST00000449264 MICAQ29983 383 aa13.26□□□□□ -0.29
TNF-208ENST00000449264 OGFRL1Q5TC84 451 aaPredicted RBP13.26□□□□□ -0.29
TNF-208ENST00000449264 ANKRD34AQ69YU3 496 aa13.26□□□□□ -0.29
TNF-208ENST00000449264 ZBTB49Q6ZSB9 765 aa13.26□□□□□ -0.29
TNF-208ENST00000449264 RRM2BQ7LG56 351 aa13.26□□□□□ -0.29
TNF-208ENST00000449264 MEX3DQ86XN8 651 aaKnown RBP13.26□□□□□ -0.29
TNF-208ENST00000449264 NRMQ8IXM6 262 aa13.26□□□□□ -0.29
TNF-208ENST00000449264 OR4K5Q8NGD3 323 aa13.26□□□□□ -0.29
TNF-208ENST00000449264 PFN4Q8NHR9 129 aa13.26□□□□□ -0.29
TNF-208ENST00000449264 TMEM239Q8WW34 195 aa13.26□□□□□ -0.29
TNF-208ENST00000449264 ACOT11Q8WXI4 607 aaPredicted RBP13.26□□□□□ -0.29
TNF-208ENST00000449264 MPP4Q96JB8 637 aa13.26□□□□□ -0.29
TNF-208ENST00000449264 FUZQ9BT04 418 aa13.26□□□□□ -0.29
TNF-208ENST00000449264 ADAM19Q9H013 955 aa13.26□□□□□ -0.29
TNF-208ENST00000449264 ZNF703Q9H7S9 590 aaPredicted RBP13.26□□□□□ -0.29
TNF-208ENST00000449264 COQ10BQ9H8M1 238 aa13.26□□□□□ -0.29
TNF-208ENST00000449264 ZNF71Q9NQZ8 489 aaPredicted RBP13.26□□□□□ -0.29
TNF-208ENST00000449264 PCDHGB7Q9Y5F8 929 aa13.26□□□□□ -0.29
TNF-208ENST00000449264 ITPR1Q14643 2758 aa13.26□□□□□ -0.29
TNF-208ENST00000449264 A0A087WUJ7 227 aa13.25□□□□□ -0.29
TNF-208ENST00000449264 A0A087WZY1 265 aa13.25□□□□□ -0.29
TNF-208ENST00000449264 TMED7-TICAM2A0A0A6YYA0 188 aa13.25□□□□□ -0.29
TNF-208ENST00000449264 HTR3AP46098 478 aa13.25□□□□□ -0.29
TNF-208ENST00000449264 GK3PQ14409 553 aa13.25□□□□□ -0.29
TNF-208ENST00000449264 TTC33Q6PID6 262 aaPredicted RBP13.25□□□□□ -0.29
TNF-208ENST00000449264 ASB18Q6ZVZ8 466 aa13.25□□□□□ -0.29
TNF-208ENST00000449264 YRDCQ86U90 279 aaKnown RBP13.25□□□□□ -0.29
TNF-208ENST00000449264 GALNT4Q8N4A0 578 aa13.25□□□□□ -0.29
TNF-208ENST00000449264 ATG16L2Q8NAA4 619 aa13.25□□□□□ -0.29
TNF-208ENST00000449264 AQP11Q8NBQ7 271 aa13.25□□□□□ -0.29
TNF-208ENST00000449264 FAM98AQ8NCA5 519 aaKnown RBP13.25□□□□□ -0.29
TNF-208ENST00000449264 ATP6V1C2Q8NEY4 427 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms