RNA–Protein interactions for RNA: ENST00000439008.1

LINC00399-201, long intergenic non-protein coding RNA 399, humanhuman

TSL 2 BASIC

Gene LINC00399, Length 414 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00399-201ENST00000439008 USP22Q9UPT9 525 aa11.87□□□□□ -0.51
LINC00399-201ENST00000439008 OTOGQ6ZRI0 2925 aa11.87□□□□□ -0.51
LINC00399-201ENST00000439008 A8MXE2 369 aa11.86□□□□□ -0.51
LINC00399-201ENST00000439008 ENPP1P22413 925 aa11.86□□□□□ -0.51
LINC00399-201ENST00000439008 ME2P23368 584 aa11.86□□□□□ -0.51
LINC00399-201ENST00000439008 UQCRC1P31930 480 aa11.86□□□□□ -0.51
LINC00399-201ENST00000439008 CARD18P57730 90 aa11.86□□□□□ -0.51
LINC00399-201ENST00000439008 RPS3AP61247 264 aaKnown RBP11.86□□□□□ -0.51
LINC00399-201ENST00000439008 SELENBP1Q13228 472 aa11.86□□□□□ -0.51
LINC00399-201ENST00000439008 NFYCQ13952 458 aa11.86□□□□□ -0.51
LINC00399-201ENST00000439008 ZNF239Q16600 458 aaKnown RBP11.86□□□□□ -0.51
LINC00399-201ENST00000439008 GCNT6Q5T4J0 391 aa11.86□□□□□ -0.51
LINC00399-201ENST00000439008 RNF220Q5VTB9 566 aa11.86□□□□□ -0.51
LINC00399-201ENST00000439008 PPP4R4Q6NUP7 873 aa11.86□□□□□ -0.51
LINC00399-201ENST00000439008 SERPINA11Q86U17 422 aa11.86□□□□□ -0.51
LINC00399-201ENST00000439008 SNX32Q86XE0 403 aa11.86□□□□□ -0.51
LINC00399-201ENST00000439008 CNEP1R1Q8N9A8 125 aa11.86□□□□□ -0.51
LINC00399-201ENST00000439008 ABHD3Q8WU67 409 aa11.86□□□□□ -0.51
LINC00399-201ENST00000439008 RNASE6Q93091 150 aaKnown RBP11.86□□□□□ -0.51
LINC00399-201ENST00000439008 PRR14Q9BWN1 585 aa11.86□□□□□ -0.51
LINC00399-201ENST00000439008 RAD21L1Q9H4I0 556 aa11.86□□□□□ -0.51
LINC00399-201ENST00000439008 TMEM38AQ9H6F2 299 aa11.86□□□□□ -0.51
LINC00399-201ENST00000439008 GALNT8Q9NY28 637 aa11.86□□□□□ -0.51
LINC00399-201ENST00000439008 CALML5Q9NZT1 146 aa11.86□□□□□ -0.51
LINC00399-201ENST00000439008 OSGIN1Q9UJX0 560 aa11.86□□□□□ -0.51
LINC00399-201ENST00000439008 ING1Q9UK53 422 aaPredicted RBP11.86□□□□□ -0.51
LINC00399-201ENST00000439008 CREBBPQ92793 2442 aa11.86□□□□□ -0.51
LINC00399-201ENST00000439008 MYO9AB2RTY4 2548 aa11.85□□□□□ -0.51
LINC00399-201ENST00000439008 LOC100653049A0A140TA62 436 aa11.85□□□□□ -0.51
LINC00399-201ENST00000439008 ZC3H12DA2A288 527 aaKnown RBP11.85□□□□□ -0.51
LINC00399-201ENST00000439008 CFAP73A6NFT4 308 aa11.85□□□□□ -0.51
LINC00399-201ENST00000439008 ZNF814B7Z6K7 855 aa11.85□□□□□ -0.51
LINC00399-201ENST00000439008 FAAHO00519 579 aa11.85□□□□□ -0.51
LINC00399-201ENST00000439008 ANGPT2O15123 496 aa11.85□□□□□ -0.51
LINC00399-201ENST00000439008 SMAD9O15198 467 aaKnown RBP11.85□□□□□ -0.51
LINC00399-201ENST00000439008 KRT34O76011 436 aa11.85□□□□□ -0.51
LINC00399-201ENST00000439008 CRHP06850 196 aa11.85□□□□□ -0.51
LINC00399-201ENST00000439008 THBS1P07996 1170 aa11.85□□□□□ -0.51
LINC00399-201ENST00000439008 PABPC4LP0CB38 370 aaKnown RBP11.85□□□□□ -0.51
LINC00399-201ENST00000439008 CCNA2P20248 432 aa11.85□□□□□ -0.51
LINC00399-201ENST00000439008 DRD4P21917 467 aa11.85□□□□□ -0.51
LINC00399-201ENST00000439008 PPIBP23284 216 aaKnown RBP11.85□□□□□ -0.51
LINC00399-201ENST00000439008 EDNRAP25101 427 aa11.85□□□□□ -0.51
LINC00399-201ENST00000439008 CDK6Q00534 326 aa11.85□□□□□ -0.51
LINC00399-201ENST00000439008 SCARB2Q14108 478 aa11.85□□□□□ -0.51
LINC00399-201ENST00000439008 LIN52Q52LA3 116 aa11.85□□□□□ -0.51
LINC00399-201ENST00000439008 RABL3Q5HYI8 236 aa11.85□□□□□ -0.51
LINC00399-201ENST00000439008 PRAMEF8Q5VWM4 474 aa11.85□□□□□ -0.51
LINC00399-201ENST00000439008 PRAMEF7Q5VXH5 474 aa11.85□□□□□ -0.51
LINC00399-201ENST00000439008 REP15Q6BDI9 236 aa11.85□□□□□ -0.51
LINC00399-201ENST00000439008 C22orf34Q6ZV56 151 aa11.85□□□□□ -0.51
LINC00399-201ENST00000439008 TREML1Q86YW5 311 aa11.85□□□□□ -0.51
LINC00399-201ENST00000439008 ZZZ3Q8IYH5 903 aa11.85□□□□□ -0.51
LINC00399-201ENST00000439008 POU5F2Q8N7G0 328 aa11.85□□□□□ -0.51
LINC00399-201ENST00000439008 ZNF610Q8N9Z0 462 aa11.85□□□□□ -0.51
LINC00399-201ENST00000439008 ZNF563Q8TA94 476 aa11.85□□□□□ -0.51
LINC00399-201ENST00000439008 RNF128Q8TEB7 428 aa11.85□□□□□ -0.51
LINC00399-201ENST00000439008 OR5B2Q96R09 309 aa11.85□□□□□ -0.51
LINC00399-201ENST00000439008 SPATA9Q9BWV2 254 aa11.85□□□□□ -0.51
LINC00399-201ENST00000439008 ADAM19Q9H013 955 aa11.85□□□□□ -0.51
LINC00399-201ENST00000439008 KAT8Q9H7Z6 458 aaKnown RBP11.85□□□□□ -0.51
LINC00399-201ENST00000439008 THUMPD1Q9NXG2 353 aaKnown RBP11.85□□□□□ -0.51
LINC00399-201ENST00000439008 CRIM1Q9NZV1 1036 aa11.85□□□□□ -0.51
LINC00399-201ENST00000439008 GMPR2Q9P2T1 348 aaKnown RBP11.85□□□□□ -0.51
LINC00399-201ENST00000439008 PACSIN3Q9UKS6 424 aa11.85□□□□□ -0.51
LINC00399-201ENST00000439008 CCDC168Q8NDH2 2452 aa11.85□□□□□ -0.51
LINC00399-201ENST00000439008 ANKRD17O75179 2603 aaKnown RBP11.84□□□□□ -0.51
LINC00399-201ENST00000439008 TMED7-TICAM2A0A0A6YYA0 188 aa11.84□□□□□ -0.51
LINC00399-201ENST00000439008 TMEM72A0PK05 275 aa11.84□□□□□ -0.51
LINC00399-201ENST00000439008 TPST2O60704 377 aa11.84□□□□□ -0.51
LINC00399-201ENST00000439008 RAMP1O60894 148 aa11.84□□□□□ -0.51
LINC00399-201ENST00000439008 SS18L1O75177 396 aaPredicted RBP11.84□□□□□ -0.51
LINC00399-201ENST00000439008 SMNDC1O75940 238 aaKnown RBP eCLIP11.84□□□□□ -0.51
LINC00399-201ENST00000439008 ETS2P15036 469 aa11.84□□□□□ -0.51
LINC00399-201ENST00000439008 TACR3P29371 465 aa11.84□□□□□ -0.51
LINC00399-201ENST00000439008 AQP1P29972 269 aa11.84□□□□□ -0.51
LINC00399-201ENST00000439008 CCKARP32238 428 aa11.84□□□□□ -0.51
LINC00399-201ENST00000439008 APOBEC1P41238 236 aaKnown RBP11.84□□□□□ -0.51
LINC00399-201ENST00000439008 SLC1A3P43003 542 aa11.84□□□□□ -0.51
LINC00399-201ENST00000439008 CRYBA2P53672 197 aa11.84□□□□□ -0.51
LINC00399-201ENST00000439008 PCBP3P57721 371 aaKnown RBP11.84□□□□□ -0.51
LINC00399-201ENST00000439008 DMTNQ08495 405 aa11.84□□□□□ -0.51
LINC00399-201ENST00000439008 FAM27E3Q08E93 113 aa11.84□□□□□ -0.51
LINC00399-201ENST00000439008 SYT14P1Q58G82 188 aa11.84□□□□□ -0.51
LINC00399-201ENST00000439008 ZNF311Q5JNZ3 666 aa11.84□□□□□ -0.51
LINC00399-201ENST00000439008 OR2A2Q6IF42 318 aa11.84□□□□□ -0.51
LINC00399-201ENST00000439008 NANOGP8Q6NSW7 305 aa11.84□□□□□ -0.51
LINC00399-201ENST00000439008 REEP3Q6NUK4 255 aa11.84□□□□□ -0.51
LINC00399-201ENST00000439008 C3orf33Q6P1S2 294 aa11.84□□□□□ -0.51
LINC00399-201ENST00000439008 FAM214BQ7L5A3 538 aa11.84□□□□□ -0.51
LINC00399-201ENST00000439008 NUFIP2Q7Z417 695 aaKnown RBP11.84□□□□□ -0.51
LINC00399-201ENST00000439008 GRINAQ7Z429 371 aa11.84□□□□□ -0.51
LINC00399-201ENST00000439008 NET1Q7Z628 596 aaPredicted RBP11.84□□□□□ -0.51
LINC00399-201ENST00000439008 BBS10Q8TAM1 723 aa11.84□□□□□ -0.51
LINC00399-201ENST00000439008 LINC01560Q8TB33 94 aa11.84□□□□□ -0.51
LINC00399-201ENST00000439008 TMEM234Q8WY98 164 aa11.84□□□□□ -0.51
LINC00399-201ENST00000439008 ELAC2Q9BQ52 826 aaKnown RBP11.84□□□□□ -0.51
LINC00399-201ENST00000439008 RBM24Q9BX46 236 aaKnown RBP11.84□□□□□ -0.51
LINC00399-201ENST00000439008 PIF1Q9H611 641 aa11.84□□□□□ -0.51
LINC00399-201ENST00000439008 NANOGQ9H9S0 305 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms