RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 LIMK1P53667 647 aa7.72□□□□□ -1.17
CD44-208ENST00000428726 KIAA1024LP59773 190 aa7.72□□□□□ -1.17
CD44-208ENST00000428726 RHAGQ02094 409 aa7.72□□□□□ -1.17
CD44-208ENST00000428726 CEBPEQ15744 281 aa7.72□□□□□ -1.17
CD44-208ENST00000428726 RAB30Q15771 203 aa7.72□□□□□ -1.17
CD44-208ENST00000428726 OCLNQ16625 522 aa7.72□□□□□ -1.17
CD44-208ENST00000428726 Q5BKY6 102 aa7.72□□□□□ -1.17
CD44-208ENST00000428726 C19orf48Q6RUI8 117 aa7.72□□□□□ -1.17
CD44-208ENST00000428726 KIRREL2Q6UWL6 708 aa7.72□□□□□ -1.17
CD44-208ENST00000428726 TMPRSS11AQ6ZMR5 421 aa7.72□□□□□ -1.17
CD44-208ENST00000428726 LANCL3Q6ZV70 420 aa7.72□□□□□ -1.17
CD44-208ENST00000428726 CXXC5Q7LFL8 322 aaKnown RBP7.72□□□□□ -1.17
CD44-208ENST00000428726 RDH10Q8IZV5 341 aa7.72□□□□□ -1.17
CD44-208ENST00000428726 C16orf52Q8NHV5 167 aa7.72□□□□□ -1.17
CD44-208ENST00000428726 GPR119Q8TDV5 335 aa7.72□□□□□ -1.17
CD44-208ENST00000428726 TMEM239Q8WW34 195 aa7.72□□□□□ -1.17
CD44-208ENST00000428726 NR4A3Q92570 626 aa7.72□□□□□ -1.17
CD44-208ENST00000428726 SLC22A18Q96BI1 424 aa7.72□□□□□ -1.17
CD44-208ENST00000428726 NPAS1Q99742 590 aa7.72□□□□□ -1.17
CD44-208ENST00000428726 NXF2Q9GZY0 626 aaKnown RBP7.72□□□□□ -1.17
CD44-208ENST00000428726 BRD7Q9NPI1 651 aa7.72□□□□□ -1.17
CD44-208ENST00000428726 ZMIZ1Q9ULJ6 1067 aa7.72□□□□□ -1.17
CD44-208ENST00000428726 LIPT1Q9Y234 373 aa7.72□□□□□ -1.17
CD44-208ENST00000428726 IER3IP1Q9Y5U9 82 aa7.72□□□□□ -1.17
CD44-208ENST00000428726 OR5K3A6NET4 321 aa7.71□□□□□ -1.17
CD44-208ENST00000428726 FAM25AB3EWG3 89 aa7.71□□□□□ -1.17
CD44-208ENST00000428726 FAM25CB3EWG5 89 aa7.71□□□□□ -1.17
CD44-208ENST00000428726 FAM25GB3EWG6 89 aa7.71□□□□□ -1.17
CD44-208ENST00000428726 SYT5O00445 386 aa7.71□□□□□ -1.17
CD44-208ENST00000428726 FOXS1O43638 330 aa7.71□□□□□ -1.17
CD44-208ENST00000428726 ALOX12BO75342 701 aa7.71□□□□□ -1.17
CD44-208ENST00000428726 PSKH1P11801 424 aa7.71□□□□□ -1.17
CD44-208ENST00000428726 GSTM3P21266 225 aa7.71□□□□□ -1.17
CD44-208ENST00000428726 SOX2P48431 317 aa7.71□□□□□ -1.17
CD44-208ENST00000428726 DEFA1P59665 94 aa7.71□□□□□ -1.17
CD44-208ENST00000428726 DEFA3P59666 94 aa7.71□□□□□ -1.17
CD44-208ENST00000428726 POU6F2P78424 691 aaPredicted RBP7.71□□□□□ -1.17
CD44-208ENST00000428726 C1DQ13901 141 aaKnown RBP7.71□□□□□ -1.17
CD44-208ENST00000428726 PRICKLE4Q2TBC4 344 aa7.71□□□□□ -1.17
CD44-208ENST00000428726 EOGTQ5NDL2 527 aa7.71□□□□□ -1.17
CD44-208ENST00000428726 BICRALQ6AI39 1079 aa7.71□□□□□ -1.17
CD44-208ENST00000428726 THOC7Q6I9Y2 204 aaKnown RBP7.71□□□□□ -1.17
CD44-208ENST00000428726 C1orf94Q6P1W5 598 aa7.71□□□□□ -1.17
CD44-208ENST00000428726 APOOLQ6UXV4 268 aa7.71□□□□□ -1.17
CD44-208ENST00000428726 TDHQ8IZJ6 230 aa7.71□□□□□ -1.17
CD44-208ENST00000428726 GJD3Q8N144 294 aa7.71□□□□□ -1.17
CD44-208ENST00000428726 OR5M1Q8NGP8 315 aa7.71□□□□□ -1.17
CD44-208ENST00000428726 CHAC2Q8WUX2 184 aa7.71□□□□□ -1.17
CD44-208ENST00000428726 MSLNLQ96KJ4 702 aa7.71□□□□□ -1.17
CD44-208ENST00000428726 SERINC2Q96SA4 455 aa7.71□□□□□ -1.17
CD44-208ENST00000428726 GDF15Q99988 308 aa7.71□□□□□ -1.17
CD44-208ENST00000428726 NUDT22Q9BRQ3 303 aa7.71□□□□□ -1.17
CD44-208ENST00000428726 GSDMCQ9BYG8 508 aa7.71□□□□□ -1.17
CD44-208ENST00000428726 SLC7A5P2Q9GIP4 190 aa7.71□□□□□ -1.17
CD44-208ENST00000428726 SLC25A18Q9H1K4 315 aa7.71□□□□□ -1.17
CD44-208ENST00000428726 TNFRSF10DQ9UBN6 386 aa7.71□□□□□ -1.17
CD44-208ENST00000428726 PHF3Q92576 2039 aaKnown RBP7.71□□□□□ -1.17
CD44-208ENST00000428726 KIF26BQ2KJY2 2108 aa7.71□□□□□ -1.18
CD44-208ENST00000428726 A0A0J9YY10 115 aa7.71□□□□□ -1.18
CD44-208ENST00000428726 ANKRD34BA5PLL1 514 aa7.71□□□□□ -1.18
CD44-208ENST00000428726 OR6C70A6NIJ9 312 aa7.71□□□□□ -1.18
CD44-208ENST00000428726 SAGE2PA6NJ88 616 aa7.71□□□□□ -1.18
CD44-208ENST00000428726 CENPXA8MT69 81 aa7.71□□□□□ -1.18
CD44-208ENST00000428726 PRAMEF26H0Y7S4 382 aa7.71□□□□□ -1.18
CD44-208ENST00000428726 H0YIG0 161 aa7.71□□□□□ -1.18
CD44-208ENST00000428726 F10P00742 488 aa7.71□□□□□ -1.18
CD44-208ENST00000428726 PROS1P07225 676 aa7.71□□□□□ -1.18
CD44-208ENST00000428726 FBXO45P0C2W1 286 aa7.71□□□□□ -1.18
CD44-208ENST00000428726 MSL3P1P0C860 447 aa7.71□□□□□ -1.18
CD44-208ENST00000428726 CHRNB1P11230 501 aa7.71□□□□□ -1.18
CD44-208ENST00000428726 EFNA3P52797 238 aa7.71□□□□□ -1.18
CD44-208ENST00000428726 RUNX1T1Q06455 604 aa7.71□□□□□ -1.18
CD44-208ENST00000428726 CD226Q15762 336 aa7.71□□□□□ -1.18
CD44-208ENST00000428726 ZNF628Q5EBL2 1059 aa7.71□□□□□ -1.18
CD44-208ENST00000428726 PRPF38BQ5VTL8 546 aaKnown RBP7.71□□□□□ -1.18
CD44-208ENST00000428726 RNLSQ5VYX0 342 aa7.71□□□□□ -1.18
CD44-208ENST00000428726 NPSR1Q6W5P4 371 aa7.71□□□□□ -1.18
CD44-208ENST00000428726 TRIM69Q86WT6 500 aa7.71□□□□□ -1.18
CD44-208ENST00000428726 FAM26EQ8N5C1 309 aa7.71□□□□□ -1.18
CD44-208ENST00000428726 ZNF433Q8N7K0 673 aaPredicted RBP7.71□□□□□ -1.18
CD44-208ENST00000428726 NANOGP1Q8N7R0 232 aa7.71□□□□□ -1.18
CD44-208ENST00000428726 OR51Q1Q8NH59 317 aa7.71□□□□□ -1.18
CD44-208ENST00000428726 PTP4A1Q93096 173 aa7.71□□□□□ -1.18
CD44-208ENST00000428726 PPP1R14AQ96A00 147 aa7.71□□□□□ -1.18
CD44-208ENST00000428726 DACT3Q96B18 629 aaPredicted RBP7.71□□□□□ -1.18
CD44-208ENST00000428726 C8orf44Q96CB5 159 aa7.71□□□□□ -1.18
CD44-208ENST00000428726 SLC38A2Q96QD8 506 aa7.71□□□□□ -1.18
CD44-208ENST00000428726 PRSS27Q9BQR3 290 aa7.71□□□□□ -1.18
CD44-208ENST00000428726 POLDIP3Q9BY77 421 aaKnown RBP7.71□□□□□ -1.18
CD44-208ENST00000428726 CDCP1Q9H5V8 836 aa7.71□□□□□ -1.18
CD44-208ENST00000428726 MTHFD2LQ9H903 347 aaPredicted RBP7.71□□□□□ -1.18
CD44-208ENST00000428726 SMURF1Q9HCE7 757 aa7.71□□□□□ -1.18
CD44-208ENST00000428726 PRTFDC1Q9NRG1 225 aa7.71□□□□□ -1.18
CD44-208ENST00000428726 SMG1Q96Q15 3661 aaKnown RBP7.71□□□□□ -1.18
CD44-208ENST00000428726 TEX51A0A1B0GUA7 166 aa7.7□□□□□ -1.18
CD44-208ENST00000428726 DAPL1A0PJW8 107 aa7.7□□□□□ -1.18
CD44-208ENST00000428726 RHPN2P1A8MT19 583 aa7.7□□□□□ -1.18
CD44-208ENST00000428726 C17orf105B2RV13 164 aa7.7□□□□□ -1.18
CD44-208ENST00000428726 MCIDASD6RGH6 385 aa7.7□□□□□ -1.18
CD44-208ENST00000428726 SELENOFO60613 162 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms