RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 VN1R3Q9BXE9 311 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 GPR62Q9BZJ7 368 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 NMNAT2Q9BZQ4 307 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 SHARPINQ9H0F6 387 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 METTL9Q9H1A3 318 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 SOX17Q9H6I2 414 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-204ENST00000423058 ESPL1Q14674 2120 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 PRAMEF27A3QJZ7 478 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 F8W036 122 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 RAB3DO95716 219 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 SLC10A3P09131 477 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 SERPINA2P20848 420 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 PRDX3P30048 256 aaKnown RBP6.44□□□□□ -1.38
SCN1A-204ENST00000423058 SEC61A1P61619 476 aaKnown RBP6.44□□□□□ -1.38
SCN1A-204ENST00000423058 BLOC1S1P78537 153 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 MFGE8Q08431 387 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-204ENST00000423058 C17orf67Q0P5P2 114 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 C14orf28Q4W4Y0 310 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 PRAMEF9Q5VWM5 478 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 IGFN1Q86VF2 1251 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 FAM217AQ8IXS0 508 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 ZFP82Q8N141 532 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 MITD1Q8WV92 249 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 CHTF18Q8WVB6 975 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 C14orf119Q9NWQ9 140 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 SLC17A6Q9P2U8 582 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 TRAV18A0A075B6X5 111 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 CD1DP15813 335 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 AQP2P41181 271 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 RAB35Q15286 201 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 ZNF74Q16587 644 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 AADACL3Q5VUY0 350 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 HEPHL1Q6MZM0 1159 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 ZNF585AQ6P3V2 769 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 CYP4V2Q6ZWL3 525 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-204ENST00000423058 OSTM1Q86WC4 334 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 SPARTQ8N0X7 666 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 ZDHHC16Q969W1 377 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 UHRF1Q96T88 793 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-204ENST00000423058 ABCG5Q9H222 651 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 XPNPEP1Q9NQW7 623 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 C1orf123Q9NWV4 160 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 LUZP4Q9P127 313 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 PCDHGA1Q9Y5H4 931 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 NXPH2O95156 264 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 FCGR2AP12318 317 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 CKMT2P17540 419 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 PNCKQ6P2M8 343 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 COMMD6Q7Z4G1 85 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 CHDHQ8NE62 594 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-204ENST00000423058 SLC6A18Q96N87 628 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 ARMC1Q9NVT9 282 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 VSX1Q9NZR4 365 aaPredicted RBP6.44□□□□□ -1.38
SCN1A-204ENST00000423058 CBLCQ9ULV8 474 aa6.44□□□□□ -1.38
SCN1A-204ENST00000423058 ASCC3Q8N3C0 2202 aaKnown RBP6.43□□□□□ -1.38
SCN1A-204ENST00000423058 CAMTA1Q9Y6Y1 1673 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 H3BQ06 376 aaPredicted RBP6.43□□□□□ -1.38
SCN1A-204ENST00000423058 ANGPTL7O43827 346 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 PRAF2O60831 178 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 SLC22A5O76082 557 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 HBE1P02100 147 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 CDK1P06493 297 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 OSMP13725 252 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 PCGF2P35227 344 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 HMGCLP35914 325 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 TEKQ02763 1124 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 TLE1Q04724 770 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 TLE4Q04727 773 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 DEFB110Q30KQ9 67 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 C14orf80Q86SX3 495 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 TSPYL5Q86VY4 417 aaPredicted RBP6.43□□□□□ -1.38
SCN1A-204ENST00000423058 ABHD11Q8NFV4 315 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 BIN3Q9NQY0 253 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 LRIT2A6NDA9 550 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 CXorf49A8MYA2 514 aaPredicted RBP6.43□□□□□ -1.38
SCN1A-204ENST00000423058 RNASET2O00584 256 aaKnown RBP6.43□□□□□ -1.38
SCN1A-204ENST00000423058 YY2O15391 372 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 TRAF3IP2O43734 574 aaPredicted RBP6.43□□□□□ -1.38
SCN1A-204ENST00000423058 ZNF254O75437 659 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 FUT1P19526 365 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 ENPP1P22413 925 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 FUT2Q10981 343 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 FAPQ12884 760 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 TSSK4Q6SA08 328 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 PRR22Q8IZ63 422 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 SCCPDHQ8NBX0 429 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 OR4M1Q8NGD0 313 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 OR52B6Q8NGF0 335 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 OR10X1Q8NGY0 326 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 ADAMTS19Q8TE59 1207 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 NPRL2Q8WTW4 380 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 ITFG2Q969R8 447 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 HEBP1Q9NRV9 189 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 HHLA2Q9UM44 414 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 NUBP2Q9Y5Y2 271 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 NID2Q14112 1375 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 TSPAN11A1L157 253 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 SEC14L6B5MCN3 397 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 AQP9O43315 295 aa6.43□□□□□ -1.38
SCN1A-204ENST00000423058 KIAA0513O60268 411 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms