RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 AGTR1P30556 359 aa11.48□□□□□ -0.57
LINC00339-202ENST00000416769 CCT3P49368 545 aaKnown RBP11.48□□□□□ -0.57
LINC00339-202ENST00000416769 MNAT1P51948 309 aa11.48□□□□□ -0.57
LINC00339-202ENST00000416769 CTBP2P56545 445 aa11.48□□□□□ -0.57
LINC00339-202ENST00000416769 EEFSECP57772 596 aaKnown RBP11.48□□□□□ -0.57
LINC00339-202ENST00000416769 RPS3AP61247 264 aaKnown RBP11.48□□□□□ -0.57
LINC00339-202ENST00000416769 RPS4XP62701 263 aaKnown RBP11.48□□□□□ -0.57
LINC00339-202ENST00000416769 SRSF2Q01130 221 aaKnown RBP11.48□□□□□ -0.57
LINC00339-202ENST00000416769 GANABQ14697 944 aaKnown RBP11.48□□□□□ -0.57
LINC00339-202ENST00000416769 CYP27C1Q4G0S4 372 aa11.48□□□□□ -0.57
LINC00339-202ENST00000416769 REP15Q6BDI9 236 aa11.48□□□□□ -0.57
LINC00339-202ENST00000416769 HEPHL1Q6MZM0 1159 aa11.48□□□□□ -0.57
LINC00339-202ENST00000416769 DLEU7Q6UYE1 221 aa11.48□□□□□ -0.57
LINC00339-202ENST00000416769 ZNF621Q6ZSS3 439 aa11.48□□□□□ -0.57
LINC00339-202ENST00000416769 RETREG3Q86VR2 466 aa11.48□□□□□ -0.57
LINC00339-202ENST00000416769 OR2L13Q8N349 312 aa11.48□□□□□ -0.57
LINC00339-202ENST00000416769 OR4C3Q8NH37 302 aa11.48□□□□□ -0.57
LINC00339-202ENST00000416769 SFXN5Q8TD22 340 aa11.48□□□□□ -0.57
LINC00339-202ENST00000416769 SH3YL1Q96HL8 342 aaPredicted RBP11.48□□□□□ -0.57
LINC00339-202ENST00000416769 GMPPAQ96IJ6 420 aaPredicted RBP11.48□□□□□ -0.57
LINC00339-202ENST00000416769 RNF145Q96MT1 663 aa11.48□□□□□ -0.57
LINC00339-202ENST00000416769 INPP5KQ9BT40 448 aa11.48□□□□□ -0.57
LINC00339-202ENST00000416769 LMF2Q9BU23 707 aaKnown RBP11.48□□□□□ -0.57
LINC00339-202ENST00000416769 SRXN1Q9BYN0 137 aa11.48□□□□□ -0.57
LINC00339-202ENST00000416769 TBL1XR1Q9BZK7 514 aa11.48□□□□□ -0.57
LINC00339-202ENST00000416769 CXorf36Q9H7Y0 433 aa11.48□□□□□ -0.57
LINC00339-202ENST00000416769 PTGES2Q9H7Z7 377 aa11.48□□□□□ -0.57
LINC00339-202ENST00000416769 YAE1D1Q9NRH1 226 aa11.48□□□□□ -0.57
LINC00339-202ENST00000416769 DDX18Q9NVP1 670 aaKnown RBP11.48□□□□□ -0.57
LINC00339-202ENST00000416769 GID8Q9NWU2 228 aa11.48□□□□□ -0.57
LINC00339-202ENST00000416769 PCDHB14Q9Y5E9 798 aa11.48□□□□□ -0.57
LINC00339-202ENST00000416769 YLPM1P49750 1951 aaKnown RBP11.47□□□□□ -0.57
LINC00339-202ENST00000416769 IGLV3-32A0A0A0MS00 114 aa11.47□□□□□ -0.57
LINC00339-202ENST00000416769 EFNA2O43921 213 aa11.47□□□□□ -0.57
LINC00339-202ENST00000416769 COQ9O75208 318 aa11.47□□□□□ -0.57
LINC00339-202ENST00000416769 GCM2O75603 506 aaPredicted RBP11.47□□□□□ -0.57
LINC00339-202ENST00000416769 T-ENOLP0DO92 83 aa11.47□□□□□ -0.57
LINC00339-202ENST00000416769 CALB2P22676 271 aa11.47□□□□□ -0.57
LINC00339-202ENST00000416769 CDKN2CP42773 168 aa11.47□□□□□ -0.57
LINC00339-202ENST00000416769 MRPS22P82650 360 aaKnown RBP11.47□□□□□ -0.57
LINC00339-202ENST00000416769 PRR5P85299 388 aa11.47□□□□□ -0.57
LINC00339-202ENST00000416769 TAB1Q15750 504 aa11.47□□□□□ -0.57
LINC00339-202ENST00000416769 CD226Q15762 336 aa11.47□□□□□ -0.57
LINC00339-202ENST00000416769 DECR1Q16698 335 aa11.47□□□□□ -0.57
LINC00339-202ENST00000416769 PGGHGQ32M88 737 aa11.47□□□□□ -0.57
LINC00339-202ENST00000416769 C6orf10Q5SRN2 563 aa11.47□□□□□ -0.57
LINC00339-202ENST00000416769 ADAM5Q6NVV9 412 aa11.47□□□□□ -0.57
LINC00339-202ENST00000416769 ZCCHC12Q6PEW1 402 aa11.47□□□□□ -0.57
LINC00339-202ENST00000416769 BHLHB9Q6PI77 547 aa11.47□□□□□ -0.57
LINC00339-202ENST00000416769 FIGNL1Q6PIW4 674 aa11.47□□□□□ -0.57
LINC00339-202ENST00000416769 HACD2Q6Y1H2 254 aa11.47□□□□□ -0.57
LINC00339-202ENST00000416769 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.47□□□□□ -0.57
LINC00339-202ENST00000416769 NUP43Q8NFH3 380 aa11.47□□□□□ -0.57
LINC00339-202ENST00000416769 HTRA1Q92743 480 aa11.47□□□□□ -0.57
LINC00339-202ENST00000416769 ROPN1LQ96C74 230 aa11.47□□□□□ -0.57
LINC00339-202ENST00000416769 RCN3Q96D15 328 aa11.47□□□□□ -0.57
LINC00339-202ENST00000416769 FAM120BQ96EK7 910 aaKnown RBP11.47□□□□□ -0.57
LINC00339-202ENST00000416769 SLCO5A1Q9H2Y9 848 aa11.47□□□□□ -0.57
LINC00339-202ENST00000416769 Q9N2J8 555 aa11.47□□□□□ -0.57
LINC00339-202ENST00000416769 MED17Q9NVC6 651 aa11.47□□□□□ -0.57
LINC00339-202ENST00000416769 SLAMF8Q9P0V8 285 aa11.47□□□□□ -0.57
LINC00339-202ENST00000416769 LIPT1Q9Y234 373 aa11.47□□□□□ -0.57
LINC00339-202ENST00000416769 SNX8Q9Y5X2 465 aa11.47□□□□□ -0.57
LINC00339-202ENST00000416769 GMEB1Q9Y692 573 aa11.47□□□□□ -0.57
LINC00339-202ENST00000416769 TRBV5-3A0A0A0MS03 114 aa11.46□□□□□ -0.57
LINC00339-202ENST00000416769 EBAG9O00559 213 aa11.46□□□□□ -0.57
LINC00339-202ENST00000416769 AIM2O14862 343 aa11.46□□□□□ -0.57
LINC00339-202ENST00000416769 RAMP1O60894 148 aa11.46□□□□□ -0.57
LINC00339-202ENST00000416769 UBOX5O94941 541 aa11.46□□□□□ -0.57
LINC00339-202ENST00000416769 KRT75O95678 551 aa11.46□□□□□ -0.57
LINC00339-202ENST00000416769 OXSR1O95747 527 aaPredicted RBP11.46□□□□□ -0.57
LINC00339-202ENST00000416769 GSNP06396 782 aa11.46□□□□□ -0.57
LINC00339-202ENST00000416769 ACP2P11117 423 aa11.46□□□□□ -0.57
LINC00339-202ENST00000416769 FCGR2AP12318 317 aa11.46□□□□□ -0.57
LINC00339-202ENST00000416769 HOXB9P17482 250 aaPredicted RBP11.46□□□□□ -0.57
LINC00339-202ENST00000416769 SFTPDP35247 375 aa11.46□□□□□ -0.57
LINC00339-202ENST00000416769 PRIM2P49643 509 aa11.46□□□□□ -0.57
LINC00339-202ENST00000416769 NFYCQ13952 458 aa11.46□□□□□ -0.57
LINC00339-202ENST00000416769 FGFBP1Q14512 234 aa11.46□□□□□ -0.57
LINC00339-202ENST00000416769 PLPPR5Q32ZL2 321 aa11.46□□□□□ -0.57
LINC00339-202ENST00000416769 NDUFAF6Q330K2 333 aa11.46□□□□□ -0.57
LINC00339-202ENST00000416769 RUNDC3AQ59EK9 446 aa11.46□□□□□ -0.57
LINC00339-202ENST00000416769 CCNJQ5T5M9 372 aa11.46□□□□□ -0.57
LINC00339-202ENST00000416769 TFAP2EQ6VUC0 442 aa11.46□□□□□ -0.57
LINC00339-202ENST00000416769 C6orf120Q7Z4R8 191 aa11.46□□□□□ -0.57
LINC00339-202ENST00000416769 DHDDSQ86SQ9 333 aa11.46□□□□□ -0.57
LINC00339-202ENST00000416769 GABRG1Q8N1C3 465 aa11.46□□□□□ -0.57
LINC00339-202ENST00000416769 GTPBP8Q8N3Z3 284 aaPredicted RBP11.46□□□□□ -0.57
LINC00339-202ENST00000416769 OR56A1Q8NGH5 318 aa11.46□□□□□ -0.57
LINC00339-202ENST00000416769 OR2V1Q8NHB1 315 aa11.46□□□□□ -0.57
LINC00339-202ENST00000416769 ZFP90Q8TF47 636 aa11.46□□□□□ -0.57
LINC00339-202ENST00000416769 LRRC58Q96CX6 371 aa11.46□□□□□ -0.57
LINC00339-202ENST00000416769 CGREF1Q99674 301 aa11.46□□□□□ -0.57
LINC00339-202ENST00000416769 HOPXQ9BPY8 73 aaPredicted RBP11.46□□□□□ -0.57
LINC00339-202ENST00000416769 SLC35A5Q9BS91 424 aa11.46□□□□□ -0.57
LINC00339-202ENST00000416769 SDHAF3Q9NRP4 125 aa11.46□□□□□ -0.57
LINC00339-202ENST00000416769 ZCCHC3Q9NUD5 404 aaKnown RBP11.46□□□□□ -0.57
LINC00339-202ENST00000416769 VAPAQ9P0L0 249 aa11.46□□□□□ -0.57
LINC00339-202ENST00000416769 RNF115Q9Y4L5 304 aa11.46□□□□□ -0.57
LINC00339-202ENST00000416769 MALRD1Q5VYJ5 2156 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 260.6 ms