RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 TXNL4BQ9NX01 149 aaKnown RBP12.49□□□□□ -0.41
LIMS1-205ENST00000410093 FLRT3Q9NZU0 649 aa12.49□□□□□ -0.41
LIMS1-205ENST00000410093 PCDHGB7Q9Y5F8 929 aa12.49□□□□□ -0.41
LIMS1-205ENST00000410093 PCDHGA5Q9Y5G8 931 aa12.49□□□□□ -0.41
LIMS1-205ENST00000410093 CLCA3PQ9Y6N3 262 aa12.49□□□□□ -0.41
LIMS1-205ENST00000410093 EML5Q05BV3 1969 aa12.49□□□□□ -0.41
LIMS1-205ENST00000410093 NPIPA5A0A0B4J1W7 369 aa12.48□□□□□ -0.41
LIMS1-205ENST00000410093 C2orf92A0A1B0GVN3 265 aa12.48□□□□□ -0.41
LIMS1-205ENST00000410093 NPIPA7E9PJI5 369 aa12.48□□□□□ -0.41
LIMS1-205ENST00000410093 SCDO00767 359 aa12.48□□□□□ -0.41
LIMS1-205ENST00000410093 YKT6O15498 198 aa12.48□□□□□ -0.41
LIMS1-205ENST00000410093 NDUFB2O95178 105 aa12.48□□□□□ -0.41
LIMS1-205ENST00000410093 CH25HO95992 272 aa12.48□□□□□ -0.41
LIMS1-205ENST00000410093 NGFRP08138 427 aa12.48□□□□□ -0.41
LIMS1-205ENST00000410093 NPIPA8P0DM63 369 aa12.48□□□□□ -0.41
LIMS1-205ENST00000410093 MAOAP21397 527 aa12.48□□□□□ -0.41
LIMS1-205ENST00000410093 TGFBR1P36897 503 aa12.48□□□□□ -0.41
LIMS1-205ENST00000410093 PGDP52209 483 aa12.48□□□□□ -0.41
LIMS1-205ENST00000410093 SLC37A1P57057 533 aa12.48□□□□□ -0.41
LIMS1-205ENST00000410093 PRPS1P60891 318 aa12.48□□□□□ -0.41
LIMS1-205ENST00000410093 LGALS3BPQ08380 585 aa12.48□□□□□ -0.41
LIMS1-205ENST00000410093 LCN1P1Q5VSP4 162 aa12.48□□□□□ -0.41
LIMS1-205ENST00000410093 PRR23CQ6ZRP0 262 aa12.48□□□□□ -0.41
LIMS1-205ENST00000410093 ZAR1Q86SH2 424 aa12.48□□□□□ -0.41
LIMS1-205ENST00000410093 CCDC190Q86UF4 302 aa12.48□□□□□ -0.41
LIMS1-205ENST00000410093 ZBTB46Q86UZ6 589 aa12.48□□□□□ -0.41
LIMS1-205ENST00000410093 TMEM151BQ8IW70 566 aa12.48□□□□□ -0.41
LIMS1-205ENST00000410093 C17orf47Q8NEP4 570 aa12.48□□□□□ -0.41
LIMS1-205ENST00000410093 LIPHQ8WWY8 451 aa12.48□□□□□ -0.41
LIMS1-205ENST00000410093 SENP5Q96HI0 755 aaPredicted RBP12.48□□□□□ -0.41
LIMS1-205ENST00000410093 LCORQ96JN0 433 aaPredicted RBP12.48□□□□□ -0.41
LIMS1-205ENST00000410093 SECISBP2Q96T21 854 aaKnown RBP12.48□□□□□ -0.41
LIMS1-205ENST00000410093 SLC30A2Q9BRI3 323 aa12.48□□□□□ -0.41
LIMS1-205ENST00000410093 TMEM43Q9BTV4 400 aa12.48□□□□□ -0.41
LIMS1-205ENST00000410093 RBCK1Q9BYM8 510 aa12.48□□□□□ -0.41
LIMS1-205ENST00000410093 KCNN2Q9H2S1 579 aa12.48□□□□□ -0.41
LIMS1-205ENST00000410093 ZNF304Q9HCX3 659 aa12.48□□□□□ -0.41
LIMS1-205ENST00000410093 C20orf141Q9NUB4 165 aa12.48□□□□□ -0.41
LIMS1-205ENST00000410093 SUSD2Q9UGT4 822 aa12.48□□□□□ -0.41
LIMS1-205ENST00000410093 SF3B6Q9Y3B4 125 aaKnown RBP12.48□□□□□ -0.41
LIMS1-205ENST00000410093 GVINP1Q7Z2Y8 2422 aa12.48□□□□□ -0.41
LIMS1-205ENST00000410093 GPR179Q6PRD1 2367 aa12.48□□□□□ -0.41
LIMS1-205ENST00000410093 A0A1B0GX78 115 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 TCRBV16S1A1N1A0A5B0 115 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 TO15178 435 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 CDC123O75794 336 aaPredicted RBP12.47□□□□□ -0.41
LIMS1-205ENST00000410093 PTTG1O95997 202 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 CLPSP04118 112 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 FBLP22087 321 aaKnown RBP12.47□□□□□ -0.41
LIMS1-205ENST00000410093 RPS19P39019 145 aaKnown RBP12.47□□□□□ -0.41
LIMS1-205ENST00000410093 RFX3P48380 749 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 OR1D5P58170 312 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 FXYD6P3P58550 94 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 RPS3AP61247 264 aaKnown RBP12.47□□□□□ -0.41
LIMS1-205ENST00000410093 PLAURQ03405 335 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 PLBD1Q6P4A8 553 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 ZNF322Q6U7Q0 402 aaPredicted RBP12.47□□□□□ -0.41
LIMS1-205ENST00000410093 DPY19L2P2Q6ZN68 376 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 TTLL10Q6ZVT0 673 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 MEX3DQ86XN8 651 aaKnown RBP12.47□□□□□ -0.41
LIMS1-205ENST00000410093 POMGNT2Q8NAT1 580 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 OR4N2Q8NGD1 307 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 GRHL3Q8TE85 626 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 PTPMT1Q8WUK0 201 aaPredicted RBP12.47□□□□□ -0.41
LIMS1-205ENST00000410093 GATAD2BQ8WXI9 593 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 C1GALT1C1Q96EU7 318 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 ZNF768Q9H5H4 540 aaKnown RBP12.47□□□□□ -0.41
LIMS1-205ENST00000410093 CAPN10Q9HC96 672 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 SMURF1Q9HCE7 757 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 PARD6AQ9NPB6 346 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 TRIM36Q9NQ86 728 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 WDR70Q9NW82 654 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 UCKL1Q9NWZ5 548 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 SLC6A5Q9Y345 797 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 ZNF337Q9Y3M9 751 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 NOX1Q9Y5S8 564 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 SPAG17Q6Q759 2223 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.47□□□□□ -0.41
LIMS1-205ENST00000410093 A0A1W2PQD3 144 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 ARPC3O15145 178 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 IGKV3-11P04433 115 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 ANKRD34CP0C6C1 535 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 UBL4AP11441 157 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 APEHP13798 732 aaKnown RBP12.47□□□□□ -0.41
LIMS1-205ENST00000410093 TGM1P22735 817 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 PTBP1P26599 531 aaKnown RBP eCLIP12.47□□□□□ -0.41
LIMS1-205ENST00000410093 NOS3P29474 1203 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 MPLP40238 635 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 DHPSP49366 369 aaPredicted RBP12.47□□□□□ -0.41
LIMS1-205ENST00000410093 BCAP31P51572 246 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 IL10RAQ13651 578 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 ATP1A4Q13733 1029 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 ERV3-1Q14264 604 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 GALEQ14376 348 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 CLPPQ16740 277 aaPredicted RBP12.47□□□□□ -0.41
LIMS1-205ENST00000410093 SLC35D3Q5M8T2 416 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 FNDC7Q5VTL7 733 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 PAQR6Q6TCH4 344 aa12.47□□□□□ -0.41
LIMS1-205ENST00000410093 PARP16Q8N5Y8 322 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms