RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 CENPLQ8N0S6 344 aaPredicted RBP5.79□□□□□ -1.48
USP40-202ENST00000409945 PLPP5Q8NEB5 264 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 ESAMQ96AP7 390 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 C8orf44Q96CB5 159 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 WDR34Q96EX3 536 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 CNDP1Q96KN2 507 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 EGLN2Q96KS0 407 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 ZNF354BQ96LW1 612 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 KCNK13Q9HB14 408 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 MMP25Q9NPA2 562 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 HINT3Q9NQE9 182 aaKnown RBP5.79□□□□□ -1.48
USP40-202ENST00000409945 DCDC2Q9UHG0 476 aa5.79□□□□□ -1.48
USP40-202ENST00000409945 FASNP49327 2511 aaKnown RBP5.79□□□□□ -1.48
USP40-202ENST00000409945 FER1L5A0AVI2 2057 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 A0A1W2PQ72 361 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 SLC25A12O75746 678 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 CDC123O75794 336 aaPredicted RBP5.78□□□□□ -1.48
USP40-202ENST00000409945 VIMP08670 466 aaKnown RBP5.78□□□□□ -1.48
USP40-202ENST00000409945 COX6A1P12074 109 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 ARSBP15848 533 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 EEF1DP29692 281 aaKnown RBP5.78□□□□□ -1.48
USP40-202ENST00000409945 RASSF2P50749 326 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 HSD17B7P56937 341 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 RAB38P57729 211 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 ASPHQ12797 758 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 EPS8Q12929 822 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 DDX39BQ13838 428 aaKnown RBP5.78□□□□□ -1.48
USP40-202ENST00000409945 SERTAD2Q14140 314 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 MEP1AQ16819 746 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 C18orf21Q32NC0 220 aaPredicted RBP5.78□□□□□ -1.48
USP40-202ENST00000409945 SFT2D3Q587I9 215 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 FBXO48Q5FWF7 155 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 TECRLQ5HYJ1 363 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 C6orf163Q5TEZ5 329 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 PLBD1Q6P4A8 553 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 PAPD4Q6PIY7 484 aaKnown RBP5.78□□□□□ -1.48
USP40-202ENST00000409945 C6orf89Q6UWU4 347 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 TIFABQ6ZNK6 161 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 LINC00696Q6ZRV3 163 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 CCDC121Q6ZUS5 278 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 PRSS41Q7RTY9 318 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 ANKRD37Q7Z713 158 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 TAGAPQ8N103 731 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 CCDC197Q8NCU1 140 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 M1APQ8TC57 530 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 DCAKDQ8WVC6 231 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 RPL36ALQ969Q0 106 aaKnown RBP5.78□□□□□ -1.48
USP40-202ENST00000409945 MS4A6EQ96DS6 147 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 PHF21BQ96EK2 531 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 MOCOSQ96EN8 888 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 QRFPRQ96P65 431 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 SMC6Q96SB8 1091 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 ELOVL6Q9H5J4 265 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 NOX4Q9NPH5 578 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 PRTFDC1Q9NRG1 225 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 PHF11Q9UIL8 331 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 SNX6Q9UNH7 406 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 CCDC88CQ9P219 2028 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 NUP210LQ5VU65 1888 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 TRAV17A0A0B4J275 112 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 A8MUI8 341 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 H0YIV9 168 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 GLRA3O75311 464 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 IFNA16P05015 189 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 TNNI3P19429 210 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 MAGEA12P43365 314 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 ZNF33BQ06732 778 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 DLG1Q12959 904 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 INAQ16352 499 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 CCDC153Q494R4 210 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 NADK2Q4G0N4 442 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 KHDRBS2Q5VWX1 349 aaKnown RBP5.78□□□□□ -1.48
USP40-202ENST00000409945 GOLGA7Q7Z5G4 137 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 CCDC63Q8NA47 563 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 ZBTB8BQ8NAP8 495 aaPredicted RBP5.78□□□□□ -1.48
USP40-202ENST00000409945 OR7G3Q8NG95 312 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 CKAP2Q8WWK9 683 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 DAZLQ92904 295 aaKnown RBP5.78□□□□□ -1.48
USP40-202ENST00000409945 ART5Q96L15 291 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 MAGEB18Q96M61 343 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 ZNF570Q96NI8 536 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 SERPINI1Q99574 410 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 TRIM4Q9C037 500 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 SPNS1Q9H2V7 528 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 NOL11Q9H8H0 719 aaKnown RBP5.78□□□□□ -1.48
USP40-202ENST00000409945 LYRM4Q9HD34 91 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 SDAD1Q9NVU7 687 aaKnown RBP eCLIP5.78□□□□□ -1.48
USP40-202ENST00000409945 LYARQ9NX58 379 aaKnown RBP5.78□□□□□ -1.48
USP40-202ENST00000409945 STMN3Q9NZ72 180 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 COPS7AQ9UBW8 275 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 GRID1Q9ULK0 1009 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 CLCA3PQ9Y6N3 262 aa5.78□□□□□ -1.48
USP40-202ENST00000409945 GCN1Q92616 2671 aaKnown RBP5.77□□□□□ -1.49
USP40-202ENST00000409945 FOXE1O00358 373 aaPredicted RBP5.77□□□□□ -1.49
USP40-202ENST00000409945 COPEO14579 308 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 ADAMDEC1O15204 470 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 HSPA12AO43301 675 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 ZIC3O60481 467 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 JRKO75564 520 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 CRCPO75575 148 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms