RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 C2orf80Q0P641 193 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 ZNF155Q12901 538 aaPredicted RBP5.05□□□□□ -1.6
CLK1-202ENST00000409403 BAATQ14032 418 aaPredicted RBP5.05□□□□□ -1.6
CLK1-202ENST00000409403 GPR176Q14439 515 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 GPNMBQ14956 572 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 TRAM2Q15035 370 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 TAF1AQ15573 450 aaPredicted RBP5.05□□□□□ -1.6
CLK1-202ENST00000409403 SLC25A52Q3SY17 297 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 ATP13A5Q4VNC0 1218 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 PAN3Q58A45 887 aaKnown RBP5.05□□□□□ -1.6
CLK1-202ENST00000409403 CARD16Q5EG05 197 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 TCTE1Q5JU00 501 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 LRIF1Q5T3J3 769 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 HIST2H2AA3Q6FI13 130 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 GRHL2Q6ISB3 625 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 ANGPTL8Q6UXH0 198 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 BAIAP2L2Q6UXY1 529 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 LIN28BQ6ZN17 250 aaKnown RBP eCLIP5.05□□□□□ -1.6
CLK1-202ENST00000409403 PTCHD4Q6ZW05 846 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 Q6ZWC4 215 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 RPS27LQ71UM5 84 aaKnown RBP5.05□□□□□ -1.6
CLK1-202ENST00000409403 PARS2Q7L3T8 475 aaKnown RBP5.05□□□□□ -1.6
CLK1-202ENST00000409403 ZNF551Q7Z340 670 aaPredicted RBP5.05□□□□□ -1.6
CLK1-202ENST00000409403 DNAJB7Q7Z6W7 309 aaPredicted RBP5.05□□□□□ -1.6
CLK1-202ENST00000409403 TSPAN33Q86UF1 283 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 LHFPL3Q86UP9 236 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 RTL3Q8N8U3 475 aaKnown RBP5.05□□□□□ -1.6
CLK1-202ENST00000409403 C12orf29Q8N999 325 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 DMBX1Q8NFW5 382 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 VN1R2Q8NFZ6 395 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 OR11H4Q8NGC9 324 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 OR6C4Q8NGE1 309 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 OR2T35Q8NGX2 323 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 MOSPD2Q8NHP6 518 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 UBA3Q8TBC4 463 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 NANPQ8TBE9 248 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 HMGB4Q8WW32 186 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 NTAN1Q96AB6 310 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 RAB7BQ96AH8 199 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 MRPL48Q96GC5 212 aaKnown RBP5.05□□□□□ -1.6
CLK1-202ENST00000409403 CELF6Q96J87 481 aaKnown RBP5.05□□□□□ -1.6
CLK1-202ENST00000409403 TEX37Q96LM6 180 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 C12orf42Q96LP6 360 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 FCRL5Q96RD9 977 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 PKMYT1Q99640 499 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 PAPOLGQ9BWT3 736 aaKnown RBP5.05□□□□□ -1.6
CLK1-202ENST00000409403 FSD1LQ9BXM9 530 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 DERL2Q9GZP9 239 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 TWSG1Q9GZX9 223 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 SPRTNQ9H040 489 aaPredicted RBP5.05□□□□□ -1.6
CLK1-202ENST00000409403 ANKRD19PQ9H560 264 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 ESRP2Q9H6T0 727 aaKnown RBP5.05□□□□□ -1.6
CLK1-202ENST00000409403 DDX31Q9H8H2 851 aaKnown RBP5.05□□□□□ -1.6
CLK1-202ENST00000409403 PRMT7Q9NVM4 692 aaPredicted RBP5.05□□□□□ -1.6
CLK1-202ENST00000409403 VNN3Q9NY84 501 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 SLCO1C1Q9NYB5 712 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 VAPAQ9P0L0 249 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 ZNF69Q9UC07 566 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 PLEKHB1Q9UF11 243 aaPredicted RBP5.05□□□□□ -1.6
CLK1-202ENST00000409403 GIMAP2Q9UG22 337 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 KLK13Q9UKR3 277 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 PLEKHA6Q9Y2H5 1048 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 LSM2Q9Y333 95 aaKnown RBP5.05□□□□□ -1.6
CLK1-202ENST00000409403 UBE2J1Q9Y385 318 aaPredicted RBP5.05□□□□□ -1.6
CLK1-202ENST00000409403 INSL6Q9Y581 213 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 SCN10AQ9Y5Y9 1956 aa5.05□□□□□ -1.6
CLK1-202ENST00000409403 PTPRQQ9UMZ3 2332 aa5.04□□□□□ -1.6
CLK1-202ENST00000409403 A0A1B0GWJ7 208 aa5.04□□□□□ -1.6
CLK1-202ENST00000409403 TMEM150BA6NC51 233 aa5.04□□□□□ -1.6
CLK1-202ENST00000409403 C5orf58C9J3I9 102 aa5.04□□□□□ -1.6
CLK1-202ENST00000409403 PRR23D1E9PI22 279 aaPredicted RBP5.04□□□□□ -1.6
CLK1-202ENST00000409403 TMPRSS11DO60235 418 aa5.04□□□□□ -1.6
CLK1-202ENST00000409403 HPGDSO60760 199 aa5.04□□□□□ -1.6
CLK1-202ENST00000409403 PRAMEF2O60811 474 aa5.04□□□□□ -1.6
CLK1-202ENST00000409403 CLN5O75503 358 aa5.04□□□□□ -1.6
CLK1-202ENST00000409403 KRT33AO76009 404 aa5.04□□□□□ -1.6
CLK1-202ENST00000409403 RGS11O94810 467 aa5.04□□□□□ -1.6
CLK1-202ENST00000409403 SIX3O95343 332 aaPredicted RBP5.04□□□□□ -1.6
CLK1-202ENST00000409403 CFDP00746 253 aaPredicted RBP5.04□□□□□ -1.6
CLK1-202ENST00000409403 SERPINA3P01011 423 aa5.04□□□□□ -1.6
CLK1-202ENST00000409403 ICAM1P05362 532 aa5.04□□□□□ -1.6
CLK1-202ENST00000409403 GLAP06280 429 aa5.04□□□□□ -1.6
CLK1-202ENST00000409403 FHP07954 510 aa5.04□□□□□ -1.6
CLK1-202ENST00000409403 UBBP0CG47 229 aa5.04□□□□□ -1.6
CLK1-202ENST00000409403 UBCP0CG48 685 aaKnown RBP5.04□□□□□ -1.6
CLK1-202ENST00000409403 PRR23D2P0DMB1 279 aaPredicted RBP5.04□□□□□ -1.6
CLK1-202ENST00000409403 FOLR2P14207 255 aa5.04□□□□□ -1.6
CLK1-202ENST00000409403 RAB4AP20338 218 aa5.04□□□□□ -1.6
CLK1-202ENST00000409403 GALP22466 123 aa5.04□□□□□ -1.6
CLK1-202ENST00000409403 PPIBP23284 216 aaKnown RBP5.04□□□□□ -1.6
CLK1-202ENST00000409403 RBMS1P29558 406 aaKnown RBP5.04□□□□□ -1.6
CLK1-202ENST00000409403 SERPINA4P29622 427 aa5.04□□□□□ -1.6
CLK1-202ENST00000409403 FGF9P31371 208 aaPredicted RBP5.04□□□□□ -1.6
CLK1-202ENST00000409403 S100A11P31949 105 aa5.04□□□□□ -1.6
CLK1-202ENST00000409403 ARL2P36404 184 aa5.04□□□□□ -1.6
CLK1-202ENST00000409403 AVPR1BP47901 424 aa5.04□□□□□ -1.6
CLK1-202ENST00000409403 SULT1E1P49888 294 aa5.04□□□□□ -1.6
CLK1-202ENST00000409403 NOVA1P51513 510 aaKnown RBP5.04□□□□□ -1.6
CLK1-202ENST00000409403 CAPZA1P52907 286 aa5.04□□□□□ -1.6
CLK1-202ENST00000409403 FOXA1P55317 472 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms