RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 ZNF888P0CJ79 500 aaPredicted RBP19.39■□□□□ 0.7
CTCF-202ENST00000401394 SULT1A3P0DMM9 295 aa19.39■□□□□ 0.7
CTCF-202ENST00000401394 SULT1A4P0DMN0 295 aa19.39■□□□□ 0.7
CTCF-202ENST00000401394 ADH7P40394 386 aa19.39■□□□□ 0.7
CTCF-202ENST00000401394 ERVK-21P61565 698 aa19.39■□□□□ 0.7
CTCF-202ENST00000401394 EXOSC7Q15024 291 aaKnown RBP19.39■□□□□ 0.7
CTCF-202ENST00000401394 MFSD12Q6NUT3 480 aa19.39■□□□□ 0.7
CTCF-202ENST00000401394 ERN2Q76MJ5 926 aaKnown RBP19.39■□□□□ 0.7
CTCF-202ENST00000401394 OR52I2Q8NH67 350 aa19.39■□□□□ 0.7
CTCF-202ENST00000401394 ZPLD1Q8TCW7 415 aa19.39■□□□□ 0.7
CTCF-202ENST00000401394 TMEM239Q8WW34 195 aa19.39■□□□□ 0.7
CTCF-202ENST00000401394 OR8D1Q8WZ84 308 aa19.39■□□□□ 0.7
CTCF-202ENST00000401394 NXPE2Q96DL1 559 aa19.39■□□□□ 0.7
CTCF-202ENST00000401394 ACTRT3Q9BYD9 372 aa19.39■□□□□ 0.7
CTCF-202ENST00000401394 NANSQ9NR45 359 aa19.39■□□□□ 0.7
CTCF-202ENST00000401394 ANKRD10Q9NXR5 420 aa19.39■□□□□ 0.7
CTCF-202ENST00000401394 ZNF223Q9UK11 482 aaPredicted RBP19.39■□□□□ 0.7
CTCF-202ENST00000401394 ADAM18Q9Y3Q7 739 aa19.39■□□□□ 0.7
CTCF-202ENST00000401394 MEIKINA0A087WXM9 373 aa19.39■□□□□ 0.69
CTCF-202ENST00000401394 SYT5O00445 386 aa19.39■□□□□ 0.69
CTCF-202ENST00000401394 CXCL2P19875 107 aa19.39■□□□□ 0.69
CTCF-202ENST00000401394 PTBP1P26599 531 aaKnown RBP eCLIP19.39■□□□□ 0.69
CTCF-202ENST00000401394 RPE65Q16518 533 aa19.39■□□□□ 0.69
CTCF-202ENST00000401394 HNRNPA1L2Q32P51 320 aaKnown RBP19.39■□□□□ 0.69
CTCF-202ENST00000401394 CD276Q5ZPR3 534 aa19.39■□□□□ 0.69
CTCF-202ENST00000401394 ZBTB44Q8NCP5 570 aa19.39■□□□□ 0.69
CTCF-202ENST00000401394 RPLP0P6Q8NHW5 317 aa19.39■□□□□ 0.69
CTCF-202ENST00000401394 BPIFA2Q96DR5 249 aa19.39■□□□□ 0.69
CTCF-202ENST00000401394 DMRTA2Q96SC8 542 aa19.39■□□□□ 0.69
CTCF-202ENST00000401394 TEX12Q9BXU0 123 aa19.39■□□□□ 0.69
CTCF-202ENST00000401394 ZNF780BQ9Y6R6 833 aa19.39■□□□□ 0.69
CTCF-202ENST00000401394 KIAA0100Q14667 2235 aaKnown RBP19.39■□□□□ 0.69
CTCF-202ENST00000401394 HMGN1P05114 100 aa19.38■□□□□ 0.69
CTCF-202ENST00000401394 F8A1P23610 371 aa19.38■□□□□ 0.69
CTCF-202ENST00000401394 FGL2Q14314 439 aa19.38■□□□□ 0.69
CTCF-202ENST00000401394 ANGPT1Q15389 498 aa19.38■□□□□ 0.69
CTCF-202ENST00000401394 ZIC1Q15915 447 aa19.38■□□□□ 0.69
CTCF-202ENST00000401394 UXS1Q8NBZ7 420 aa19.38■□□□□ 0.69
CTCF-202ENST00000401394 OR52L1Q8NGH7 329 aa19.38■□□□□ 0.69
CTCF-202ENST00000401394 GFI1Q99684 422 aa19.38■□□□□ 0.69
CTCF-202ENST00000401394 CLEC4MQ9H2X3 399 aaPredicted RBP19.38■□□□□ 0.69
CTCF-202ENST00000401394 ADH1AP07327 375 aa19.38■□□□□ 0.69
CTCF-202ENST00000401394 TMIGD3P0DMS9 266 aaPredicted RBP19.38■□□□□ 0.69
CTCF-202ENST00000401394 CFL1P23528 166 aaKnown RBP19.38■□□□□ 0.69
CTCF-202ENST00000401394 KIAA1024LP59773 190 aa19.38■□□□□ 0.69
CTCF-202ENST00000401394 DPTQ07507 201 aa19.38■□□□□ 0.69
CTCF-202ENST00000401394 KLF9Q13886 244 aaPredicted RBP19.38■□□□□ 0.69
CTCF-202ENST00000401394 KCNAB1Q14722 419 aa19.38■□□□□ 0.69
CTCF-202ENST00000401394 TCTE1Q5JU00 501 aa19.38■□□□□ 0.69
CTCF-202ENST00000401394 ALKAL2Q6UX46 152 aa19.38■□□□□ 0.69
CTCF-202ENST00000401394 TMEM64Q6YI46 380 aa19.38■□□□□ 0.69
CTCF-202ENST00000401394 OR2L5Q8NG80 312 aa19.38■□□□□ 0.69
CTCF-202ENST00000401394 SDF2Q99470 211 aa19.38■□□□□ 0.69
CTCF-202ENST00000401394 ZNF436Q9C0F3 470 aaPredicted RBP19.38■□□□□ 0.69
CTCF-202ENST00000401394 CREBZFQ9NS37 354 aa19.38■□□□□ 0.69
CTCF-202ENST00000401394 CLTBP09497 229 aa19.38■□□□□ 0.69
CTCF-202ENST00000401394 POLR2CP19387 275 aaPredicted RBP19.38■□□□□ 0.69
CTCF-202ENST00000401394 PTGS2P35354 604 aa19.38■□□□□ 0.69
CTCF-202ENST00000401394 DEFB115Q30KQ5 88 aa19.38■□□□□ 0.69
CTCF-202ENST00000401394 PXKQ7Z7A4 578 aa19.38■□□□□ 0.69
CTCF-202ENST00000401394 DNAAF1Q8NEP3 725 aa19.38■□□□□ 0.69
CTCF-202ENST00000401394 OR2L3Q8NG85 312 aa19.38■□□□□ 0.69
CTCF-202ENST00000401394 OR52E2Q8NGJ4 325 aa19.38■□□□□ 0.69
CTCF-202ENST00000401394 OR2M2Q96R28 347 aa19.38■□□□□ 0.69
CTCF-202ENST00000401394 TMEM168Q9H0V1 697 aa19.38■□□□□ 0.69
CTCF-202ENST00000401394 TRPV4Q9HBA0 871 aa19.38■□□□□ 0.69
CTCF-202ENST00000401394 HCN3Q9P1Z3 774 aa19.38■□□□□ 0.69
CTCF-202ENST00000401394 A0A1B0GTH9 108 aa19.37■□□□□ 0.69
CTCF-202ENST00000401394 A0A1W2PPL8 197 aa19.37■□□□□ 0.69
CTCF-202ENST00000401394 SMAD9O15198 467 aaKnown RBP19.37■□□□□ 0.69
CTCF-202ENST00000401394 NDUFS1P28331 727 aa19.37■□□□□ 0.69
CTCF-202ENST00000401394 PRKAR1BP31321 381 aa19.37■□□□□ 0.69
CTCF-202ENST00000401394 RAB28P51157 221 aa19.37■□□□□ 0.69
CTCF-202ENST00000401394 ADAMTS14Q8WXS8 1223 aa19.37■□□□□ 0.69
CTCF-202ENST00000401394 PELI1Q96FA3 418 aa19.37■□□□□ 0.69
CTCF-202ENST00000401394 LRIG1Q96JA1 1093 aa19.37■□□□□ 0.69
CTCF-202ENST00000401394 SLC6A17Q9H1V8 727 aa19.37■□□□□ 0.69
CTCF-202ENST00000401394 UBQLN2Q9UHD9 624 aa19.37■□□□□ 0.69
CTCF-202ENST00000401394 GNG8Q9UK08 70 aa19.37■□□□□ 0.69
CTCF-202ENST00000401394 ADAM29Q9UKF5 820 aa19.37■□□□□ 0.69
CTCF-202ENST00000401394 A0A1B0GVT2 93 aa19.37■□□□□ 0.69
CTCF-202ENST00000401394 GXYLT2A0PJZ3 443 aa19.37■□□□□ 0.69
CTCF-202ENST00000401394 M0R233 179 aa19.37■□□□□ 0.69
CTCF-202ENST00000401394 SLC9A3R1O14745 358 aaPredicted RBP19.37■□□□□ 0.69
CTCF-202ENST00000401394 SC5DO75845 299 aa19.37■□□□□ 0.69
CTCF-202ENST00000401394 DCTDP32321 178 aa19.37■□□□□ 0.69
CTCF-202ENST00000401394 RPS11P62280 158 aaKnown RBP eCLIP19.37■□□□□ 0.69
CTCF-202ENST00000401394 ODF4Q2M2E3 257 aa19.37■□□□□ 0.69
CTCF-202ENST00000401394 C2orf68Q2NKX9 166 aa19.37■□□□□ 0.69
CTCF-202ENST00000401394 NDUFAF6Q330K2 333 aa19.37■□□□□ 0.69
CTCF-202ENST00000401394 OR5M10Q6IEU7 315 aa19.37■□□□□ 0.69
CTCF-202ENST00000401394 OR1F2PQ96R84 312 aa19.37■□□□□ 0.69
CTCF-202ENST00000401394 ST6GALNAC2Q9UJ37 374 aa19.37■□□□□ 0.69
CTCF-202ENST00000401394 COPS3Q9UNS2 423 aa19.37■□□□□ 0.69
CTCF-202ENST00000401394 SIGLEC7Q9Y286 467 aa19.37■□□□□ 0.69
CTCF-202ENST00000401394 ZBTB32Q9Y2Y4 487 aaPredicted RBP19.37■□□□□ 0.69
CTCF-202ENST00000401394 MRPS2Q9Y399 296 aaKnown RBP19.37■□□□□ 0.69
CTCF-202ENST00000401394 TRIM77I1YAP6 450 aa19.36■□□□□ 0.69
CTCF-202ENST00000401394 MID1O15344 667 aa19.36■□□□□ 0.69
CTCF-202ENST00000401394 HSF2Q03933 536 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms