RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 DFFBO76075 338 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 SYNGR4O95473 234 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 GASTP01350 101 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 CD68P34810 354 aaPredicted RBP11.12□□□□□ -0.63
SYNPO-202ENST00000394243 HCCSP53701 268 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 HABP2Q14520 560 aaPredicted RBP11.12□□□□□ -0.63
SYNPO-202ENST00000394243 ARSJQ5FYB0 599 aaPredicted RBP11.12□□□□□ -0.63
SYNPO-202ENST00000394243 MANEALQ5VSG8 457 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 RBMS3Q6XE24 437 aaKnown RBP11.12□□□□□ -0.63
SYNPO-202ENST00000394243 ZNF836Q6ZNA1 936 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 COX15Q7KZN9 410 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 UMODL1-AS1Q8N2C9 162 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 OR5M11Q96RB7 305 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 EXO1Q9UQ84 846 aaKnown RBP11.12□□□□□ -0.63
SYNPO-202ENST00000394243 SLC9B1P1A6NJY1 282 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 PPP6CO00743 305 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 AP1G1O43747 822 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 SULT1C4O75897 302 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 INHBEP58166 350 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 SELENOVP59797 346 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 GPLD1P80108 840 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 DLX2Q07687 328 aaPredicted RBP11.12□□□□□ -0.63
SYNPO-202ENST00000394243 ADIRFQ15847 76 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 OR1E3Q8WZA6 343 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 SEC61A1P61619 476 aaKnown RBP11.12□□□□□ -0.63
SYNPO-202ENST00000394243 EXOSC6Q5RKV6 272 aaKnown RBP11.12□□□□□ -0.63
SYNPO-202ENST00000394243 SFXN4Q6P4A7 337 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 ZNF574Q6ZN55 896 aaPredicted RBP11.12□□□□□ -0.63
SYNPO-202ENST00000394243 GPR26Q8NDV2 337 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 DDOQ99489 341 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 INIPQ9NRY2 104 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 VSX1Q9NZR4 365 aaPredicted RBP11.12□□□□□ -0.63
SYNPO-202ENST00000394243 C19orf25Q9UFG5 118 aaPredicted RBP11.12□□□□□ -0.63
SYNPO-202ENST00000394243 FBXL4Q9UKA2 621 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 WNT6Q9Y6F9 365 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 F5H5K5 113 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 CSO75390 466 aaKnown RBP11.12□□□□□ -0.63
SYNPO-202ENST00000394243 S100A8P05109 93 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 IMPA1P29218 277 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 STK19P49842 368 aaPredicted RBP11.12□□□□□ -0.63
SYNPO-202ENST00000394243 PGGHGQ32M88 737 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 FAM199XQ6PEV8 388 aaPredicted RBP11.12□□□□□ -0.63
SYNPO-202ENST00000394243 AVL9Q8NBF6 648 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 OR4K15Q8NH41 348 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 C1orf123Q9NWV4 160 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 ZNF281Q9Y2X9 895 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 MROH1Q8NDA8 1641 aa11.12□□□□□ -0.63
SYNPO-202ENST00000394243 ARID1BQ8NFD5 2236 aaPredicted RBP11.11□□□□□ -0.63
SYNPO-202ENST00000394243 JMJD7P0C870 316 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 SPI1P17947 270 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 IDUAP35475 653 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 SRP9P49458 86 aaKnown RBP11.11□□□□□ -0.63
SYNPO-202ENST00000394243 OR2B8PP59922 312 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 RAB30Q15771 203 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 AAK1Q2M2I8 961 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 NAA11Q9BSU3 229 aaPredicted RBP11.11□□□□□ -0.63
SYNPO-202ENST00000394243 SMG9Q9H0W8 520 aaKnown RBP11.11□□□□□ -0.63
SYNPO-202ENST00000394243 OR52D1Q9H346 318 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 SEMA4GQ9NTN9 838 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 SCAF4O95104 1147 aaKnown RBP11.11□□□□□ -0.63
SYNPO-202ENST00000394243 ARHGAP19Q14CB8 494 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 KIAA1143Q96AT1 154 aaPredicted RBP11.11□□□□□ -0.63
SYNPO-202ENST00000394243 ZNF160Q9HCG1 818 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.11□□□□□ -0.63
SYNPO-202ENST00000394243 GABRR3A8MPY1 467 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 H3BUI4 141 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 NUDT21O43809 227 aaKnown RBP11.11□□□□□ -0.63
SYNPO-202ENST00000394243 GPR32O75388 356 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 UBL3O95164 117 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 MC3RP41968 323 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 EMP2P54851 167 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 TESK1Q15569 626 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 ZNF805Q5CZA5 627 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 SLC6A19Q695T7 634 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 KCNRGQ8N5I3 272 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 OR13C9Q8NGT0 318 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 SGK3Q96BR1 496 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 BPIFA2Q96DR5 249 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.11□□□□□ -0.63
SYNPO-202ENST00000394243 ACPTQ9BZG2 426 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 OSGIN2Q9Y236 505 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 MROH2AA6NES4 1674 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 MICAL3Q7RTP6 2002 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 NSA2O95478 260 aaKnown RBP11.11□□□□□ -0.63
SYNPO-202ENST00000394243 CLEC2LP0C7M8 214 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 FOLR1P15328 257 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 ELK1P19419 428 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 LAP3P28838 519 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 RPS15AP62244 130 aaKnown RBP11.11□□□□□ -0.63
SYNPO-202ENST00000394243 FOXB2Q5VYV0 432 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 CHADLQ6NUI6 762 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 CLEC9AQ6UXN8 241 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 PPLO60437 1756 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 SLIT3O75094 1523 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 LRIT2A6NDA9 550 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 ACOD1A6NK06 481 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 RAF1P04049 648 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 CRABP1P29762 137 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 ILKQ13418 452 aa11.11□□□□□ -0.63
SYNPO-202ENST00000394243 CLINT1Q14677 625 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms