RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 C7orf66A4D0T2 115 aa13.18□□□□□ -0.3
CD48-201ENST00000368045 SLC9B1P1A6NJY1 282 aa13.18□□□□□ -0.3
CD48-201ENST00000368045 NOTOA8MTQ0 251 aa13.18□□□□□ -0.3
CD48-201ENST00000368045 FZD7O75084 574 aa13.18□□□□□ -0.3
CD48-201ENST00000368045 ZNF780AO75290 641 aaPredicted RBP13.18□□□□□ -0.3
CD48-201ENST00000368045 GATBO75879 557 aaKnown RBP13.18□□□□□ -0.3
CD48-201ENST00000368045 KLF8O95600 359 aaPredicted RBP13.18□□□□□ -0.3
CD48-201ENST00000368045 CBX7O95931 251 aa13.18□□□□□ -0.3
CD48-201ENST00000368045 MRPL3P09001 348 aaKnown RBP13.18□□□□□ -0.3
CD48-201ENST00000368045 CT62P0C5K7 136 aa13.18□□□□□ -0.3
CD48-201ENST00000368045 OR2T7P0C7T2 308 aa13.18□□□□□ -0.3
CD48-201ENST00000368045 AGFG1P52594 562 aaKnown RBP13.18□□□□□ -0.3
CD48-201ENST00000368045 GBX2P52951 348 aaPredicted RBP13.18□□□□□ -0.3
CD48-201ENST00000368045 OR12D2P58182 307 aa13.18□□□□□ -0.3
CD48-201ENST00000368045 ANGPT1Q15389 498 aa13.18□□□□□ -0.3
CD48-201ENST00000368045 ZNF767PQ75MW2 155 aa13.18□□□□□ -0.3
CD48-201ENST00000368045 ZNF550Q7Z398 422 aa13.18□□□□□ -0.3
CD48-201ENST00000368045 GPR135Q8IZ08 494 aa13.18□□□□□ -0.3
CD48-201ENST00000368045 GHDCQ8N2G8 530 aa13.18□□□□□ -0.3
CD48-201ENST00000368045 C17orf47Q8NEP4 570 aa13.18□□□□□ -0.3
CD48-201ENST00000368045 OR2T27Q8NH04 317 aa13.18□□□□□ -0.3
CD48-201ENST00000368045 GRHL3Q8TE85 626 aa13.18□□□□□ -0.3
CD48-201ENST00000368045 FGF14Q92915 247 aa13.18□□□□□ -0.3
CD48-201ENST00000368045 ANKRD9Q96BM1 317 aaPredicted RBP13.18□□□□□ -0.3
CD48-201ENST00000368045 HYLS1Q96M11 299 aa13.18□□□□□ -0.3
CD48-201ENST00000368045 CMTM3Q96MX0 182 aa13.18□□□□□ -0.3
CD48-201ENST00000368045 TNFRSF13CQ96RJ3 184 aa13.18□□□□□ -0.3
CD48-201ENST00000368045 TMEM106CQ9BVX2 250 aa13.18□□□□□ -0.3
CD48-201ENST00000368045 DNAJB12Q9NXW2 375 aaKnown RBP13.18□□□□□ -0.3
CD48-201ENST00000368045 NUBP2Q9Y5Y2 271 aa13.18□□□□□ -0.3
CD48-201ENST00000368045 RFXAPO00287 272 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 LANCL1O43813 399 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 HYAL3O43820 417 aaPredicted RBP13.17□□□□□ -0.3
CD48-201ENST00000368045 TMEM127O75204 238 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 RFPL3O75679 317 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 UBL3O95164 117 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 NDUFB2O95178 105 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 PAHP00439 452 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 PYCR1P32322 319 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 ACAA2P42765 397 aaKnown RBP13.17□□□□□ -0.3
CD48-201ENST00000368045 PSMD4P55036 377 aaKnown RBP13.17□□□□□ -0.3
CD48-201ENST00000368045 OR10A3P58181 314 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 LGALS3BPQ08380 585 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 ILF3Q12906 894 aaKnown RBP eCLIP13.17□□□□□ -0.3
CD48-201ENST00000368045 ALG11Q2TAA5 492 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 SNAP47Q5SQN1 464 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 FAM27D1Q5T7N8 215 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 IL20RBQ6UXL0 311 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 LINC00114Q6XXX2 140 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 TMEM184AQ6ZMB5 413 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 PRSS41Q7RTY9 318 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 CDH24Q86UP0 819 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 CMIPQ8IY22 773 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 OR52R1Q8NGF1 315 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 GHSRQ92847 366 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 SMIM19Q96E16 107 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 CNN2Q99439 309 aaKnown RBP13.17□□□□□ -0.3
CD48-201ENST00000368045 DPAGT1Q9H3H5 408 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 GALNT9Q9HCQ5 603 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 ZNF275Q9NSD4 429 aaPredicted RBP13.17□□□□□ -0.3
CD48-201ENST00000368045 PTTG3PQ9NZH4 202 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 ICAM5Q9UMF0 924 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 A0A1B0GTQ1 180 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 GRXCR1A8MXD5 290 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 H0Y8X5 98 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 FLRT2O43155 660 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 EEF1E1O43324 174 aaKnown RBP13.17□□□□□ -0.3
CD48-201ENST00000368045 OR10H2O60403 315 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 PPM1BO75688 479 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 PRKCAP17252 672 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 AKT2P31751 481 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 MMP15P51511 669 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 RAG2P55895 527 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 GALK2Q01415 458 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 FHL1Q13642 323 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 CDK5R1Q15078 307 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 CCDC85BQ15834 202 aaPredicted RBP13.17□□□□□ -0.3
CD48-201ENST00000368045 ZNF141Q15928 474 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 NTRK2Q16620 822 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 CCDC58Q4VC31 144 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 ALG10BQ5I7T1 473 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 ANKRD54Q6NXT1 300 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 ULK3Q6PHR2 472 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 ASB18Q6ZVZ8 466 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 OVCH1Q7RTY7 1134 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 UBE2Q1Q7Z7E8 422 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 TMEFF1Q8IYR6 380 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 CYB561A3Q8NBI2 242 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 OR5T3Q8NGG3 340 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 OR5J2Q8NH18 312 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 HAVCR2Q8TDQ0 301 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 DOK4Q8TEW6 326 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 DEDD2Q8WXF8 326 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 SCMH1Q96GD3 660 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 PEX11GQ96HA9 241 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 EMC7Q9NPA0 242 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 MKKSQ9NPJ1 570 aaPredicted RBP13.17□□□□□ -0.3
CD48-201ENST00000368045 EVA1BQ9NVM1 165 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 STMN3Q9NZ72 180 aa13.17□□□□□ -0.3
CD48-201ENST00000368045 CHRNA9Q9UGM1 479 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms