RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 IFT52Q9Y366 437 aa3.64□□□□□ -1.83
LIG4-201ENST00000356922 ESPL1Q14674 2120 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 ITPR2Q14571 2701 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 A0A1B0GTH9 108 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 A0A1W2PNR3 127 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 CBR3O75828 277 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 SNX4O95219 450 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 RASAL1O95294 804 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 ZNF26P17031 533 aaPredicted RBP3.63□□□□□ -1.83
LIG4-201ENST00000356922 GDF1P27539 372 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 IFNA8P32881 189 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 NTF4P34130 210 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 GCKP35557 465 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 MAGEA2P43356 314 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 ELOAQ14241 798 aaKnown RBP3.63□□□□□ -1.83
LIG4-201ENST00000356922 LARS2Q15031 903 aaKnown RBP3.63□□□□□ -1.83
LIG4-201ENST00000356922 HYAL4Q2M3T9 481 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 GXYLT1Q4G148 440 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 LIN52Q52LA3 116 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 SWT1Q5T5J6 900 aaKnown RBP3.63□□□□□ -1.83
LIG4-201ENST00000356922 LINC00114Q6XXX2 140 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 GDF7Q7Z4P5 450 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 ZNF605Q86T29 641 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 KRT73Q86Y46 540 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 OR52E4Q8NGH9 312 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 LRTOMTQ8WZ04 291 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 KTI12Q96EK9 354 aaPredicted RBP3.63□□□□□ -1.83
LIG4-201ENST00000356922 MCHR1Q99705 422 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 FUZQ9BT04 418 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 HOXD1Q9GZZ0 328 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 SEMA6AQ9H2E6 1030 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 OCEL1Q9H607 264 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 LDAHQ9H6V9 325 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 ST6GALNAC1Q9NSC7 600 aaPredicted RBP3.63□□□□□ -1.83
LIG4-201ENST00000356922 CCM2LQ9NUG4 571 aaPredicted RBP3.63□□□□□ -1.83
LIG4-201ENST00000356922 OLAHQ9NV23 265 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 SLC7A7Q9UM01 511 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 TESMINQ9Y4I5 508 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 CELSR1Q9NYQ6 3014 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 A0A0B4J2E0 115 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 A0A1B0GX12 115 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 H3BML4 177 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 KLRC4-KLRK1H3BQV0 150 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 ETV2O00321 342 aaPredicted RBP3.63□□□□□ -1.83
LIG4-201ENST00000356922 PIP5K1CO60331 668 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 C8BP07358 591 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 IGFBP1P08833 259 aaPredicted RBP3.63□□□□□ -1.83
LIG4-201ENST00000356922 BMP7P18075 431 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 CBLP22681 906 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 RGS8P57771 180 aaPredicted RBP3.63□□□□□ -1.83
LIG4-201ENST00000356922 ELF3P78545 371 aaPredicted RBP3.63□□□□□ -1.83
LIG4-201ENST00000356922 FHL1Q13642 323 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 CTU2Q2VPK5 515 aaKnown RBP3.63□□□□□ -1.83
LIG4-201ENST00000356922 INTS11Q5TA45 600 aaKnown RBP3.63□□□□□ -1.83
LIG4-201ENST00000356922 ATG4DQ86TL0 474 aaPredicted RBP3.63□□□□□ -1.83
LIG4-201ENST00000356922 GGNQ86UU5 652 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 KDM8Q8N371 416 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 LSMEM1Q8N8F7 131 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 OR5M9Q8NGP3 310 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 PFN4Q8NHR9 129 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 ZNF845Q96IR2 970 aaPredicted RBP3.63□□□□□ -1.83
LIG4-201ENST00000356922 ZNF300Q96RE9 604 aaPredicted RBP3.63□□□□□ -1.83
LIG4-201ENST00000356922 TIMP4Q99727 224 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 PKP2Q99959 881 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 MMADHCQ9H3L0 296 aaPredicted RBP3.63□□□□□ -1.83
LIG4-201ENST00000356922 KLHL28Q9NXS3 571 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 CALML5Q9NZT1 146 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 TUBD1Q9UJT1 453 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 KLF13Q9Y2Y9 288 aaPredicted RBP3.63□□□□□ -1.83
LIG4-201ENST00000356922 PCDHGB6Q9Y5F9 930 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 MED12LQ86YW9 2145 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 DOPEY1Q5JWR5 2465 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 FLNBO75369 2602 aaKnown RBP3.63□□□□□ -1.83
LIG4-201ENST00000356922 A0A087WUU8 490 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 A0A0J9YW62 118 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 DHRS12A0PJE2 317 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 TMEM72A0PK05 275 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 ANKUB1A6NFN9 424 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 NPIPA2E9PIF3 369 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 NPIPA3F8WFD2 350 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 H0Y3Z8 333 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 KPNA4O00629 521 aaPredicted RBP3.63□□□□□ -1.83
LIG4-201ENST00000356922 CDC42EP2O14613 210 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 SOX30O94993 753 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 HPNP05981 417 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 ZNF24P17028 368 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 EDNRAP25101 427 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 SFTPDP35247 375 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 SLC1A3P43003 542 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 UQCRFS1P47985 274 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 LIMS1P48059 325 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 LHX2P50458 406 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 COPZ1P61923 177 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 TXNL4AP83876 142 aaKnown RBP3.63□□□□□ -1.83
LIG4-201ENST00000356922 MRPL49Q13405 166 aaKnown RBP3.63□□□□□ -1.83
LIG4-201ENST00000356922 PLEKHM3Q6ZWE6 761 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 ZDHHC21Q8IVQ6 265 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 UBQLNLQ8IYU4 475 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 ZNF843Q8N446 348 aa3.63□□□□□ -1.83
LIG4-201ENST00000356922 ZNF563Q8TA94 476 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms