RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 RTL8AQ9BWD3 113 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 MUC13Q9H3R2 512 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 DLL3Q9NYJ7 618 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 SLAMF8Q9P0V8 285 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 SF3B6Q9Y3B4 125 aaKnown RBP7.75□□□□□ -1.17
HMGB1-203ENST00000341423 SNX13Q9Y5W8 968 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 METTL21EPA6NDL7 271 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 ANTXRLA6NF34 631 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 J3QW42 95 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 BCKDHAP12694 445 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 GBX2P52951 348 aaPredicted RBP7.75□□□□□ -1.17
HMGB1-203ENST00000341423 CCNIQ14094 377 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 EXOSC7Q15024 291 aaKnown RBP7.75□□□□□ -1.17
HMGB1-203ENST00000341423 FAM27D1Q5T7N8 215 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 PTCHD4Q6ZW05 846 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 USP51Q70EK9 711 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 SHFQ7M4L6 423 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 HSD17B8Q92506 261 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 ZBTB8AQ96BR9 441 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 PTDSS2Q9BVG9 487 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 FAM120CQ9NX05 1096 aaKnown RBP7.75□□□□□ -1.17
HMGB1-203ENST00000341423 RAP2CQ9Y3L5 183 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 SLC22A7Q9Y694 548 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 WASH4PA8MWX3 477 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 ZBTB42B2RXF5 422 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 ADAMDEC1O15204 470 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 DIRAS3O95661 229 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 ZNF12P17014 697 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 CD79BP40259 229 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 ATP4BP51164 291 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 PPP1CAP62136 330 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 TRA2BP62995 288 aaKnown RBP7.75□□□□□ -1.17
HMGB1-203ENST00000341423 GABPB1Q06547 395 aaPredicted RBP7.75□□□□□ -1.17
HMGB1-203ENST00000341423 IGFN1Q86VF2 1251 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 LINC01560Q8TB33 94 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 PIGCQ92535 297 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 CNOT9Q92600 299 aaKnown RBP7.75□□□□□ -1.17
HMGB1-203ENST00000341423 SLC39A9Q9NUM3 307 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 PIGLQ9Y2B2 252 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 TOGARAM1Q9Y4F4 1720 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 ZNF780AO75290 641 aaPredicted RBP7.75□□□□□ -1.17
HMGB1-203ENST00000341423 ZNF432O94892 652 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 TGM6O95932 706 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 PGRP06401 933 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 CD48P09326 243 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 PGAM2P15259 253 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 GM2AP17900 193 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 FASP25445 335 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 PSMB5P28074 263 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 MAGEA3P43357 314 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 MAGEA12P43365 314 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 PCYT1AP49585 367 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 PITX1P78337 314 aaPredicted RBP7.75□□□□□ -1.17
HMGB1-203ENST00000341423 ARL16Q0P5N6 197 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 BCL7AQ4VC05 210 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 ST6GALNAC3Q8NDV1 305 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 ROBO4Q8WZ75 1007 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 BTBD2Q9BX70 525 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 VN1R3Q9BXE9 311 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 OSBPL7Q9BZF2 842 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 B3GNT4Q9C0J1 378 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 APMAPQ9HDC9 416 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 PARD6AQ9NPB6 346 aa7.75□□□□□ -1.17
HMGB1-203ENST00000341423 OR6C70A6NIJ9 312 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 TCF21O43680 179 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 C1orf105O95561 183 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 FAM157BP0CG42 384 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 ADH6P28332 368 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 TSFMP43897 325 aaKnown RBP7.74□□□□□ -1.17
HMGB1-203ENST00000341423 AQP5P55064 265 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 CDK6Q00534 326 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 TMEM267Q0VDI3 215 aaPredicted RBP7.74□□□□□ -1.17
HMGB1-203ENST00000341423 WBP2NLQ6ICG8 309 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 METTL2BQ6P1Q9 378 aaKnown RBP7.74□□□□□ -1.17
HMGB1-203ENST00000341423 FAM83HQ6ZRV2 1179 aaPredicted RBP7.74□□□□□ -1.17
HMGB1-203ENST00000341423 B3GNT8Q7Z7M8 397 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 RPEQ96AT9 228 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 PLPPR2Q96GM1 343 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 SLC39A13Q96H72 371 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 MACROD1Q9BQ69 325 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 CST11Q9H112 138 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 CD320Q9NPF0 282 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 B3GNT2Q9NY97 397 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 DNAJC27Q9NZQ0 273 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 ZIM2Q9NZV7 527 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 CARD8Q9Y2G2 431 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 OARD1Q9Y530 152 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 SESN1Q9Y6P5 492 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 DNASE2O00115 360 aaPredicted RBP7.74□□□□□ -1.17
HMGB1-203ENST00000341423 PGRMC2O15173 223 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 GYPCP04921 128 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 NPPBP16860 134 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 PDHA2P29803 388 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 ACVR1BP36896 505 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 TNFRSF17Q02223 184 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 DUSP8Q13202 625 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 EDDM3AQ14507 147 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 TRAM2Q15035 370 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 TCTN1Q2MV58 587 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 NIPA2Q8N8Q9 360 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms