RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 BTLAQ7Z6A9 289 aa14.17□□□□□ -0.14
CLN3-201ENST00000333496 MTDHQ86UE4 582 aaKnown RBP14.17□□□□□ -0.14
CLN3-201ENST00000333496 PEX5LQ8IYB4 626 aa14.17□□□□□ -0.14
CLN3-201ENST00000333496 OR52P1PQ8NH57 321 aa14.17□□□□□ -0.14
CLN3-201ENST00000333496 TMEM234Q8WY98 164 aa14.17□□□□□ -0.14
CLN3-201ENST00000333496 OSTF1Q92882 214 aa14.17□□□□□ -0.14
CLN3-201ENST00000333496 C14orf79Q96F83 325 aa14.17□□□□□ -0.14
CLN3-201ENST00000333496 RSPO3Q9BXY4 272 aaPredicted RBP14.17□□□□□ -0.14
CLN3-201ENST00000333496 SRXN1Q9BYN0 137 aa14.17□□□□□ -0.14
CLN3-201ENST00000333496 MYLK2Q9H1R3 596 aa14.17□□□□□ -0.14
CLN3-201ENST00000333496 A4GALTQ9NPC4 353 aa14.17□□□□□ -0.14
CLN3-201ENST00000333496 ACER3Q9NUN7 267 aa14.17□□□□□ -0.14
CLN3-201ENST00000333496 LEF1Q9UJU2 399 aaPredicted RBP14.17□□□□□ -0.14
CLN3-201ENST00000333496 NDUFAF1Q9Y375 327 aa14.17□□□□□ -0.14
CLN3-201ENST00000333496 PDZD2O15018 2839 aa14.17□□□□□ -0.14
CLN3-201ENST00000333496 A0A0G2JPF8 293 aa14.16□□□□□ -0.14
CLN3-201ENST00000333496 A8MXE2 369 aa14.16□□□□□ -0.14
CLN3-201ENST00000333496 HNRNPCL2B2RXH8 293 aa14.16□□□□□ -0.14
CLN3-201ENST00000333496 HNRNPCL3B7ZW38 293 aa14.16□□□□□ -0.14
CLN3-201ENST00000333496 CGAP01215 116 aa14.16□□□□□ -0.14
CLN3-201ENST00000333496 HNRNPCL4P0DMR1 293 aa14.16□□□□□ -0.14
CLN3-201ENST00000333496 GPX2P18283 190 aa14.16□□□□□ -0.14
CLN3-201ENST00000333496 CARD18P57730 90 aa14.16□□□□□ -0.14
CLN3-201ENST00000333496 RUNDC3AQ59EK9 446 aa14.16□□□□□ -0.14
CLN3-201ENST00000333496 PPP4R4Q6NUP7 873 aa14.16□□□□□ -0.14
CLN3-201ENST00000333496 ZNF836Q6ZNA1 936 aa14.16□□□□□ -0.14
CLN3-201ENST00000333496 DPP10Q8N608 796 aa14.16□□□□□ -0.14
CLN3-201ENST00000333496 CNEP1R1Q8N9A8 125 aa14.16□□□□□ -0.14
CLN3-201ENST00000333496 ZNF563Q8TA94 476 aa14.16□□□□□ -0.14
CLN3-201ENST00000333496 TSPEARQ8WU66 669 aa14.16□□□□□ -0.14
CLN3-201ENST00000333496 CCDC106Q9BWC9 280 aa14.16□□□□□ -0.14
CLN3-201ENST00000333496 PIGMQ9H3S5 423 aa14.16□□□□□ -0.14
CLN3-201ENST00000333496 BCL2L10Q9HD36 194 aa14.16□□□□□ -0.14
CLN3-201ENST00000333496 FOXD3Q9UJU5 478 aaPredicted RBP14.16□□□□□ -0.14
CLN3-201ENST00000333496 PACSIN3Q9UKS6 424 aa14.16□□□□□ -0.14
CLN3-201ENST00000333496 A0A1W2PNR3 127 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 CDHR4A6H8M9 788 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 ARAFP10398 606 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 FCGR2AP12318 317 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 PPIBP23284 216 aaKnown RBP14.15□□□□□ -0.14
CLN3-201ENST00000333496 IDH2P48735 452 aaKnown RBP14.15□□□□□ -0.14
CLN3-201ENST00000333496 EEF1A1P68104 462 aaKnown RBP14.15□□□□□ -0.14
CLN3-201ENST00000333496 SIRPAP78324 504 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 MERTKQ12866 999 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 ZNF239Q16600 458 aaKnown RBP14.15□□□□□ -0.14
CLN3-201ENST00000333496 PDSS1Q5T2R2 415 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 EEF1A1P5Q5VTE0 462 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 C3orf33Q6P1S2 294 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 CLIP4Q8N3C7 705 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 ROBO4Q8WZ75 1007 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 CPPED1Q9BRF8 314 aaPredicted RBP14.15□□□□□ -0.14
CLN3-201ENST00000333496 PRRG4Q9BZD6 226 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 SAR1AQ9NR31 198 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 CTPS2Q9NRF8 586 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 GALNT8Q9NY28 637 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 MCTS1Q9ULC4 181 aaKnown RBP14.15□□□□□ -0.14
CLN3-201ENST00000333496 CLEC4AQ9UMR7 237 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 ZNF443Q9Y2A4 671 aaPredicted RBP14.15□□□□□ -0.14
CLN3-201ENST00000333496 TMEM247A6NEH6 219 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 GJE1A6NN92 205 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 FBP2O00757 339 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 MSTNO14793 375 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 CCDC22O60826 627 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 PGM3O95394 542 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 SYNGR4O95473 234 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 THBS1P07996 1170 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 GKN3PP0CG01 181 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 SSTR2P30874 369 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 ACAA2P42765 397 aaKnown RBP14.15□□□□□ -0.14
CLN3-201ENST00000333496 KRTAP10-9P60411 292 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 TLE4Q04727 773 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 EPS8Q12929 822 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 GNA13Q14344 377 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 PRAMEF8Q5VWM4 474 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 PRAMEF7Q5VXH5 474 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 FAM214BQ7L5A3 538 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 GRINAQ7Z429 371 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 DHDDSQ86SQ9 333 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 ADGRG3Q86Y34 549 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 LRRC46Q96FV0 321 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 RBM24Q9BX46 236 aaKnown RBP14.15□□□□□ -0.14
CLN3-201ENST00000333496 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.15□□□□□ -0.14
CLN3-201ENST00000333496 KCNN3Q9UGI6 736 aa14.15□□□□□ -0.14
CLN3-201ENST00000333496 VGLL3A8MV65 326 aa14.14□□□□□ -0.15
CLN3-201ENST00000333496 ANGPT2O15123 496 aa14.14□□□□□ -0.15
CLN3-201ENST00000333496 SMNDC1O75940 238 aaKnown RBP eCLIP14.14□□□□□ -0.15
CLN3-201ENST00000333496 PABPC4LP0CB38 370 aaKnown RBP14.14□□□□□ -0.15
CLN3-201ENST00000333496 APOBEC1P41238 236 aaKnown RBP14.14□□□□□ -0.15
CLN3-201ENST00000333496 KLF10Q13118 480 aa14.14□□□□□ -0.15
CLN3-201ENST00000333496 SELPLGQ14242 412 aa14.14□□□□□ -0.15
CLN3-201ENST00000333496 ADRM1Q16186 407 aa14.14□□□□□ -0.15
CLN3-201ENST00000333496 LIN52Q52LA3 116 aa14.14□□□□□ -0.15
CLN3-201ENST00000333496 GCNT6Q5T4J0 391 aa14.14□□□□□ -0.15
CLN3-201ENST00000333496 RNF220Q5VTB9 566 aa14.14□□□□□ -0.15
CLN3-201ENST00000333496 ZNF474Q6S9Z5 364 aaPredicted RBP14.14□□□□□ -0.15
CLN3-201ENST00000333496 NFKBIDQ8NI38 313 aa14.14□□□□□ -0.15
CLN3-201ENST00000333496 RNF128Q8TEB7 428 aa14.14□□□□□ -0.15
CLN3-201ENST00000333496 CPNE4Q96A23 557 aaPredicted RBP14.14□□□□□ -0.15
CLN3-201ENST00000333496 GMPPAQ96IJ6 420 aaPredicted RBP14.14□□□□□ -0.15
CLN3-201ENST00000333496 ANKRD27Q96NW4 1050 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms