RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 NRROSQ86YC3 692 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 OR13C5Q8NGS8 318 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 OR13C2Q8NGS9 318 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 OR5H6Q8NGV6 325 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 ACER1Q8TDN7 264 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 GTF2H4Q92759 462 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 SGK3Q96BR1 496 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 RBP7Q96R05 134 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 ACP6Q9NPH0 428 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 SH3BGRL2Q9UJC5 107 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 MED12Q93074 2177 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 NRP1O14786 923 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 PPP1R2P9O14990 202 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 SYT7O43581 403 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 TSPAN6O43657 245 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 APOC3P02656 99 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 HLA-DQB2P05538 268 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 ABCG1P45844 678 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 KCNQ1P51787 676 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF133P52736 654 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-201ENST00000303395 F2RL1P55085 397 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 MTPNP58546 118 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 GPR85P60893 370 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF616Q08AN1 781 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 PLA1AQ53H76 456 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 DPPA3Q6W0C5 159 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 ANKRD46Q86W74 232 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 OR2L13Q8N349 312 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 TMEM130Q8N3G9 435 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 OR4E2Q8NGC2 313 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 GOT1L1Q8NHS2 421 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-201ENST00000303395 SMIM4Q8WVI0 70 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 TRMT2BQ96GJ1 504 aaKnown RBP4.93□□□□□ -1.62
SCN1A-201ENST00000303395 NOL4LQ96MY1 436 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-201ENST00000303395 SORCS2Q96PQ0 1159 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 F2RL3Q96RI0 385 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 MARVELD1Q9BSK0 173 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 RIMS4Q9H426 269 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-201ENST00000303395 GNB4Q9HAV0 340 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 TEX10Q9NXF1 929 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-201ENST00000303395 A0A1B0GUL6 1792 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 SLC22A23A1A5C7 686 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 OR6C65A6NJZ3 312 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 MEN1O00255 615 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 TGM5O43548 720 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 GSTZ1O43708 216 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-201ENST00000303395 OLFM2O95897 454 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 THBS1P07996 1170 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 CTXN2P0C2S0 81 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 METTL15P1P0C7V9 234 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF43P17038 809 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 C5AR1P21730 350 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 HTR1FP30939 366 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 STK19P49842 368 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-201ENST00000303395 SEC61A1P61619 476 aaKnown RBP4.93□□□□□ -1.62
SCN1A-201ENST00000303395 RPS15AP62244 130 aaKnown RBP4.93□□□□□ -1.62
SCN1A-201ENST00000303395 CD83Q01151 205 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF267Q14586 743 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-201ENST00000303395 AGTRAPQ6RW13 159 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF439Q8NDP4 499 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 OR5T1Q8NG75 326 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 OR9A1PQ8NGU1 263 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 OR6N1Q8NGY5 312 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 FANK1Q8TC84 345 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 LCN9Q8WX39 176 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 MARC2Q969Z3 335 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 PIWIL1Q96J94 861 aaKnown RBP4.93□□□□□ -1.62
SCN1A-201ENST00000303395 NUDT16L1Q9BRJ7 211 aaKnown RBP4.93□□□□□ -1.62
SCN1A-201ENST00000303395 NXF2Q9GZY0 626 aaKnown RBP4.93□□□□□ -1.62
SCN1A-201ENST00000303395 OR51V1Q9H2C8 321 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 TMPRSS5Q9H3S3 457 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 ZIC2O95409 532 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-201ENST00000303395 IFI30P13284 250 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 UGT8Q16880 541 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 VASNQ6EMK4 673 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 PSRC1Q6PGN9 363 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-201ENST00000303395 C15orf54Q8N8G6 183 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 GLIS3Q8NEA6 775 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 HOXB13Q92826 284 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-201ENST00000303395 ZNF558Q96NG5 402 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 OSMRQ99650 979 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 WACQ9BTA9 647 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 FAM186AA6NE01 2351 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 A0A0G2JLW4 131 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 CXorf65A6NEN9 183 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 TRABD2BA6NFA1 517 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 FFAR3O14843 346 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 GPR42O15529 346 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 LILRB3O75022 631 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 GPR32O75388 356 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 CNOT4O95628 575 aaKnown RBP4.93□□□□□ -1.62
SCN1A-201ENST00000303395 PCCBP05166 539 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 C1GALT1C1LP0DN25 315 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 ATP1B2P14415 290 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-201ENST00000303395 DDCP20711 480 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 CD34P28906 385 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 TAS2R30P59541 319 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 FAM74A1Q5RGS3 127 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 PAQR3Q6TCH7 311 aa4.93□□□□□ -1.62
SCN1A-201ENST00000303395 ACOT7LQ6ZUV0 252 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms