RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 MC2RQ01718 297 aa13.08□□□□□ -0.32
C9orf3-202ENST00000297979 UBE2UQ5VVX9 321 aa13.08□□□□□ -0.32
C9orf3-202ENST00000297979 SLC30A6Q6NXT4 461 aa13.08□□□□□ -0.32
C9orf3-202ENST00000297979 LSRQ86X29 649 aaPredicted RBP13.08□□□□□ -0.32
C9orf3-202ENST00000297979 ERI1Q8IV48 349 aaKnown RBP13.08□□□□□ -0.32
C9orf3-202ENST00000297979 FANK1Q8TC84 345 aa13.08□□□□□ -0.32
C9orf3-202ENST00000297979 RAB2BQ8WUD1 216 aa13.08□□□□□ -0.32
C9orf3-202ENST00000297979 OMA1Q96E52 524 aa13.08□□□□□ -0.32
C9orf3-202ENST00000297979 LRR1Q96L50 414 aa13.08□□□□□ -0.32
C9orf3-202ENST00000297979 PHOX2BQ99453 314 aa13.08□□□□□ -0.32
C9orf3-202ENST00000297979 FUNDC2Q9BWH2 189 aa13.08□□□□□ -0.32
C9orf3-202ENST00000297979 MEPEQ9NQ76 525 aaPredicted RBP13.08□□□□□ -0.32
C9orf3-202ENST00000297979 EXOSC3Q9NQT5 275 aaKnown RBP13.08□□□□□ -0.32
C9orf3-202ENST00000297979 RPL36Q9Y3U8 105 aaKnown RBP13.08□□□□□ -0.32
C9orf3-202ENST00000297979 POM121CA8CG34 1229 aa13.08□□□□□ -0.32
C9orf3-202ENST00000297979 CCL4P13236 92 aa13.08□□□□□ -0.32
C9orf3-202ENST00000297979 ACVR2AP27037 513 aa13.08□□□□□ -0.32
C9orf3-202ENST00000297979 SKP2Q13309 424 aa13.08□□□□□ -0.32
C9orf3-202ENST00000297979 PGGHGQ32M88 737 aa13.08□□□□□ -0.32
C9orf3-202ENST00000297979 SYT14P1Q58G82 188 aa13.08□□□□□ -0.32
C9orf3-202ENST00000297979 APOOLQ6UXV4 268 aa13.08□□□□□ -0.32
C9orf3-202ENST00000297979 NFAM1Q8NET5 270 aaPredicted RBP13.08□□□□□ -0.32
C9orf3-202ENST00000297979 OR4Q3Q8NH05 313 aa13.08□□□□□ -0.32
C9orf3-202ENST00000297979 TMEM163Q8TC26 289 aa13.08□□□□□ -0.32
C9orf3-202ENST00000297979 BRIX1Q8TDN6 353 aaKnown RBP13.08□□□□□ -0.32
C9orf3-202ENST00000297979 DNAJA4Q8WW22 397 aaPredicted RBP13.08□□□□□ -0.32
C9orf3-202ENST00000297979 FGF11Q92914 225 aa13.08□□□□□ -0.32
C9orf3-202ENST00000297979 CRB3Q9BUF7 120 aa13.08□□□□□ -0.32
C9orf3-202ENST00000297979 FBXO8Q9NRD0 319 aa13.08□□□□□ -0.32
C9orf3-202ENST00000297979 KMT2EQ8IZD2 1858 aa13.07□□□□□ -0.32
C9orf3-202ENST00000297979 GTPBP1O00178 669 aaKnown RBP13.07□□□□□ -0.32
C9orf3-202ENST00000297979 LCKP06239 509 aa13.07□□□□□ -0.32
C9orf3-202ENST00000297979 CYC1P08574 325 aa13.07□□□□□ -0.32
C9orf3-202ENST00000297979 ZNF28P17035 718 aa13.07□□□□□ -0.32
C9orf3-202ENST00000297979 ABCD3P28288 659 aa13.07□□□□□ -0.32
C9orf3-202ENST00000297979 ST13P50502 369 aaKnown RBP13.07□□□□□ -0.32
C9orf3-202ENST00000297979 RNF4P78317 190 aa13.07□□□□□ -0.32
C9orf3-202ENST00000297979 ZNF91Q05481 1191 aa13.07□□□□□ -0.32
C9orf3-202ENST00000297979 LSAMPQ13449 338 aa13.07□□□□□ -0.32
C9orf3-202ENST00000297979 PLAG1Q6DJT9 500 aa13.07□□□□□ -0.32
C9orf3-202ENST00000297979 MRPL14Q6P1L8 145 aaKnown RBP13.07□□□□□ -0.32
C9orf3-202ENST00000297979 LINC00114Q6XXX2 140 aa13.07□□□□□ -0.32
C9orf3-202ENST00000297979 BCDIN3DQ7Z5W3 292 aaKnown RBP13.07□□□□□ -0.32
C9orf3-202ENST00000297979 SLCO6A1Q86UG4 719 aa13.07□□□□□ -0.32
C9orf3-202ENST00000297979 APCDD1LQ8NCL9 501 aa13.07□□□□□ -0.32
C9orf3-202ENST00000297979 OR2T33Q8NG76 320 aa13.07□□□□□ -0.32
C9orf3-202ENST00000297979 SAMD8Q96LT4 415 aa13.07□□□□□ -0.32
C9orf3-202ENST00000297979 MESP1Q9BRJ9 268 aa13.07□□□□□ -0.32
C9orf3-202ENST00000297979 OR52D1Q9H346 318 aa13.07□□□□□ -0.32
C9orf3-202ENST00000297979 PPIEQ9UNP9 301 aaKnown RBP13.07□□□□□ -0.32
C9orf3-202ENST00000297979 ZNF264O43296 627 aa13.07□□□□□ -0.32
C9orf3-202ENST00000297979 RFPL3O75679 317 aa13.07□□□□□ -0.32
C9orf3-202ENST00000297979 SAGP10523 405 aaPredicted RBP13.07□□□□□ -0.32
C9orf3-202ENST00000297979 DBTP11182 482 aaKnown RBP13.07□□□□□ -0.32
C9orf3-202ENST00000297979 FUT1P19526 365 aa13.07□□□□□ -0.32
C9orf3-202ENST00000297979 NUBP1P53384 320 aa13.07□□□□□ -0.32
C9orf3-202ENST00000297979 PNLIPRP2P54317 469 aa13.07□□□□□ -0.32
C9orf3-202ENST00000297979 IRF3Q14653 427 aa13.07□□□□□ -0.32
C9orf3-202ENST00000297979 RPL13AP3Q6NVV1 102 aa13.07□□□□□ -0.32
C9orf3-202ENST00000297979 PAPD4Q6PIY7 484 aaKnown RBP13.07□□□□□ -0.32
C9orf3-202ENST00000297979 HSDL2Q6YN16 418 aa13.07□□□□□ -0.32
C9orf3-202ENST00000297979 CYP4Z2PQ8N1L4 340 aa13.07□□□□□ -0.32
C9orf3-202ENST00000297979 OR52L1Q8NGH7 329 aa13.07□□□□□ -0.32
C9orf3-202ENST00000297979 C9orf43Q8TAL5 461 aaPredicted RBP13.07□□□□□ -0.32
C9orf3-202ENST00000297979 INTS12Q96CB8 462 aaKnown RBP13.07□□□□□ -0.32
C9orf3-202ENST00000297979 ZNF582Q96NG8 517 aaPredicted RBP13.07□□□□□ -0.32
C9orf3-202ENST00000297979 SPEGQ15772 3267 aa13.07□□□□□ -0.32
C9orf3-202ENST00000297979 EFCAB9A8MZ26 197 aa13.06□□□□□ -0.32
C9orf3-202ENST00000297979 STMND1H3BQB6 276 aa13.06□□□□□ -0.32
C9orf3-202ENST00000297979 OIP5O43482 229 aa13.06□□□□□ -0.32
C9orf3-202ENST00000297979 ATE1O95260 518 aa13.06□□□□□ -0.32
C9orf3-202ENST00000297979 NGFRP08138 427 aa13.06□□□□□ -0.32
C9orf3-202ENST00000297979 PRKACAP17612 351 aa13.06□□□□□ -0.32
C9orf3-202ENST00000297979 RELQ04864 619 aaPredicted RBP13.06□□□□□ -0.32
C9orf3-202ENST00000297979 DESI1Q6ICB0 168 aa13.06□□□□□ -0.32
C9orf3-202ENST00000297979 CPEB2Q7Z5Q1 589 aaKnown RBP13.06□□□□□ -0.32
C9orf3-202ENST00000297979 OR13C2Q8NGS9 318 aa13.06□□□□□ -0.32
C9orf3-202ENST00000297979 TP53INP1Q96A56 240 aa13.06□□□□□ -0.32
C9orf3-202ENST00000297979 LPAR4Q99677 370 aa13.06□□□□□ -0.32
C9orf3-202ENST00000297979 CDCA4Q9BXL8 241 aa13.06□□□□□ -0.32
C9orf3-202ENST00000297979 WDR54Q9H977 334 aa13.06□□□□□ -0.32
C9orf3-202ENST00000297979 C19orf25Q9UFG5 118 aaPredicted RBP13.06□□□□□ -0.32
C9orf3-202ENST00000297979 IL20RAQ9UHF4 553 aa13.06□□□□□ -0.32
C9orf3-202ENST00000297979 ENPP5Q9UJA9 477 aa13.06□□□□□ -0.32
C9orf3-202ENST00000297979 NXT1Q9UKK6 140 aaKnown RBP13.06□□□□□ -0.32
C9orf3-202ENST00000297979 SURF4O15260 269 aa13.06□□□□□ -0.32
C9orf3-202ENST00000297979 TSPAN9O75954 239 aa13.06□□□□□ -0.32
C9orf3-202ENST00000297979 RCBTB2O95199 551 aa13.06□□□□□ -0.32
C9orf3-202ENST00000297979 KLK3P07288 261 aaPredicted RBP13.06□□□□□ -0.32
C9orf3-202ENST00000297979 CCKBRP32239 447 aa13.06□□□□□ -0.32
C9orf3-202ENST00000297979 CCR4P51679 360 aa13.06□□□□□ -0.32
C9orf3-202ENST00000297979 WBP2NLQ6ICG8 309 aa13.06□□□□□ -0.32
C9orf3-202ENST00000297979 TMEM205Q6UW68 189 aa13.06□□□□□ -0.32
C9orf3-202ENST00000297979 C3orf49Q96BT1 292 aa13.06□□□□□ -0.32
C9orf3-202ENST00000297979 PLEKHA8Q96JA3 519 aa13.06□□□□□ -0.32
C9orf3-202ENST00000297979 LRFN5Q96NI6 719 aa13.06□□□□□ -0.32
C9orf3-202ENST00000297979 WDR77Q9BQA1 342 aaPredicted RBP13.06□□□□□ -0.32
C9orf3-202ENST00000297979 AKIRIN1Q9H9L7 192 aaPredicted RBP13.06□□□□□ -0.32
C9orf3-202ENST00000297979 MED17Q9NVC6 651 aa13.06□□□□□ -0.32
C9orf3-202ENST00000297979 LUZP4Q9P127 313 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms