RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 CDKN3Q16667 212 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 GGTA1PQ4G0N0 100 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 ARMCX4Q5H9R4 360 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 PAPD7Q5XG87 772 aaKnown RBP4.1□□□□□ -1.75
CD44-202ENST00000278385 SLC8B1Q6J4K2 584 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 C11orf63Q6NUN7 778 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 FUT10Q6P4F1 479 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 TTC33Q6PID6 262 aaPredicted RBP4.1□□□□□ -1.75
CD44-202ENST00000278385 VITQ6UXI7 678 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 PLEKHG7Q6ZR37 379 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 MON1BQ7L1V2 547 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 DHDDSQ86SQ9 333 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 KCNMB4Q86W47 210 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 CCDC25Q86WR0 208 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 PLD3Q8IV08 490 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 MAP7D3Q8IWC1 876 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 SPEM1Q8N4L4 309 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 FAM98AQ8NCA5 519 aaKnown RBP4.1□□□□□ -1.75
CD44-202ENST00000278385 SMRP1Q8NCR6 262 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 SPATA22Q8NHS9 363 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 NUDCD2Q8WVJ2 157 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 TMEM37Q8WXS4 190 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 SMPDL3AQ92484 453 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 SMPDL3BQ92485 455 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 MTBPQ96DY7 904 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 DUS3LQ96G46 650 aaKnown RBP4.1□□□□□ -1.75
CD44-202ENST00000278385 P2RY11Q96G91 374 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 SNF8Q96H20 258 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 GRAMD2BQ96HH9 432 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 CPB2Q96IY4 423 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 CXorf58Q96LI9 332 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 ZNF578Q96N58 590 aaPredicted RBP4.1□□□□□ -1.75
CD44-202ENST00000278385 CTRCQ99895 268 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 TTYH2Q9BSA4 534 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 MED10Q9BTT4 135 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 DPH7Q9BTV6 452 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 TIPINQ9BVW5 301 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 DGCR6LQ9BY27 220 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 DRC3Q9H069 523 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 ILKAPQ9H0C8 392 aaPredicted RBP4.1□□□□□ -1.75
CD44-202ENST00000278385 ZBP1Q9H171 429 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 CLK4Q9HAZ1 481 aaKnown RBP4.1□□□□□ -1.75
CD44-202ENST00000278385 CYSLTR2Q9NS75 346 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 DDX19AQ9NUU7 478 aaKnown RBP4.1□□□□□ -1.75
CD44-202ENST00000278385 PTTG2Q9NZH5 202 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 IFNKQ9P0W0 207 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 MIOXQ9UGB7 285 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 APOBEC3BQ9UH17 382 aaKnown RBP4.1□□□□□ -1.75
CD44-202ENST00000278385 IKZF2Q9UKS7 526 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 LRRC42Q9Y546 428 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 KPTNQ9Y664 436 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 TRIP12Q14669 1992 aaPredicted RBP4.1□□□□□ -1.75
CD44-202ENST00000278385 ZMYM2Q9UBW7 1377 aa4.1□□□□□ -1.75
CD44-202ENST00000278385 A0A0A6YYH2 397 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 A0A1B0GW15 77 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 SH3PXD2BA1X283 911 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 OR2M5A3KFT3 312 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 ARL5CA6NH57 179 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 A6NJ64 397 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 LINC01548A6NM66 108 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 GOLGA8JA6NMD2 632 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 C17orf105B2RV13 164 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 LOC730098B7Z3J9 87 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 RNASEK-C17orf49H0YIS7 233 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 H3BTX0 84 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 K7ERI5 159 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 RAB29O14966 203 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 LDB2O43679 373 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 NDUFB4O95168 129 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 WDPCPO95876 746 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 CST4P01036 141 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 OCMP0CE72 109 aaPredicted RBP4.09□□□□□ -1.75
CD44-202ENST00000278385 TRIM49P0CI25 452 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 TRIM49CP0CI26 452 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 TSPAN8P19075 237 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 CD58P19256 250 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 GTF2E2P29084 291 aaKnown RBP4.09□□□□□ -1.75
CD44-202ENST00000278385 HMOX2P30519 316 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 HMGCLP35914 325 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 NPBWR2P48146 333 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 SOX2P48431 317 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 CSNK1DP48730 415 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 NPY2RP49146 381 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 COMPP49747 757 aaPredicted RBP4.09□□□□□ -1.75
CD44-202ENST00000278385 GTF2A1P52655 376 aaPredicted RBP4.09□□□□□ -1.75
CD44-202ENST00000278385 OR2B6P58173 313 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 GLO1Q04760 184 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 RAD51Q06609 339 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 PLA2G7Q13093 441 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 KNOP1Q1ED39 458 aaKnown RBP4.09□□□□□ -1.75
CD44-202ENST00000278385 ODF4Q2M2E3 257 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 EIF2S3LQ2VIR3 472 aaKnown RBP4.09□□□□□ -1.75
CD44-202ENST00000278385 GLYR1Q49A26 553 aaPredicted RBP4.09□□□□□ -1.75
CD44-202ENST00000278385 COQ5Q5HYK3 327 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 MANEAQ5SRI9 462 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 OTUD3Q5T2D3 398 aaPredicted RBP4.09□□□□□ -1.75
CD44-202ENST00000278385 FAM69BQ5VUD6 431 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 LYPLAL1Q5VWZ2 237 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 TIGD3Q6B0B8 471 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 OR52W1Q6IF63 320 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms