RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 PLEKHA8Q96JA3 519 aa15.06■□□□□ 0
USP4-201ENST00000265560 HCAR1Q9BXC0 346 aa15.06■□□□□ 0
USP4-201ENST00000265560 HOXD1Q9GZZ0 328 aa15.06■□□□□ 0
USP4-201ENST00000265560 ZNF160Q9HCG1 818 aa15.06■□□□□ 0
USP4-201ENST00000265560 FBXL4Q9UKA2 621 aa15.06■□□□□ 0
USP4-201ENST00000265560 PADI1Q9ULC6 663 aa15.06■□□□□ 0
USP4-201ENST00000265560 SIGLEC7Q9Y286 467 aa15.06■□□□□ 0
USP4-201ENST00000265560 CDH10Q9Y6N8 788 aa15.06■□□□□ 0
USP4-201ENST00000265560 COL5A1P20908 1838 aaPredicted RBP15.06■□□□□ 0
USP4-201ENST00000265560 TTC36A6NLP5 189 aa15.06■□□□□ 0
USP4-201ENST00000265560 ZNF99A8MXY4 864 aaPredicted RBP15.06■□□□□ 0
USP4-201ENST00000265560 PPP1R3DO95685 299 aa15.06■□□□□ 0
USP4-201ENST00000265560 MT-CO3P00414 261 aa15.06■□□□□ 0
USP4-201ENST00000265560 TGFBR1P36897 503 aa15.06■□□□□ 0
USP4-201ENST00000265560 ZNF91Q05481 1191 aa15.06■□□□□ 0
USP4-201ENST00000265560 PCOLCEQ15113 449 aa15.06■□□□□ 0
USP4-201ENST00000265560 PRSS48Q7RTY5 328 aa15.06■□□□□ 0
USP4-201ENST00000265560 BPHLQ86WA6 291 aaPredicted RBP15.06■□□□□ 0
USP4-201ENST00000265560 SMAP2Q8WU79 429 aaPredicted RBP15.06■□□□□ 0
USP4-201ENST00000265560 HSPBAP1Q96EW2 488 aa15.06■□□□□ 0
USP4-201ENST00000265560 ZNF582Q96NG8 517 aaPredicted RBP15.06■□□□□ 0
USP4-201ENST00000265560 MOGAT1Q96PD6 335 aa15.06■□□□□ 0
USP4-201ENST00000265560 OR5M11Q96RB7 305 aa15.06■□□□□ 0
USP4-201ENST00000265560 FUNDC2Q9BWH2 189 aa15.06■□□□□ 0
USP4-201ENST00000265560 MED11Q9P086 117 aa15.06■□□□□ 0
USP4-201ENST00000265560 MYOTQ9UBF9 498 aa15.06■□□□□ 0
USP4-201ENST00000265560 MGAQ8IWI9 3026 aa15.05■□□□□ 0
USP4-201ENST00000265560 IMPA2O14732 288 aa15.05■□□□□ -0
USP4-201ENST00000265560 OPN1LWP04000 364 aa15.05■□□□□ -0
USP4-201ENST00000265560 GYPBP06028 91 aa15.05■□□□□ -0
USP4-201ENST00000265560 CDK1P06493 297 aa15.05■□□□□ -0
USP4-201ENST00000265560 BMP7P18075 431 aa15.05■□□□□ -0
USP4-201ENST00000265560 TRIP6Q15654 476 aaKnown RBP15.05■□□□□ -0
USP4-201ENST00000265560 CPOQ8IVL8 374 aa15.05■□□□□ -0
USP4-201ENST00000265560 FAM71CQ8NEG0 241 aa15.05■□□□□ -0
USP4-201ENST00000265560 ATP6V1C2Q8NEY4 427 aa15.05■□□□□ -0
USP4-201ENST00000265560 OSTF1Q92882 214 aa15.05■□□□□ -0
USP4-201ENST00000265560 MUL1Q969V5 352 aa15.05■□□□□ -0
USP4-201ENST00000265560 NDUFA13Q9P0J0 144 aa15.05■□□□□ -0
USP4-201ENST00000265560 VDAC3Q9Y277 283 aa15.05■□□□□ -0
USP4-201ENST00000265560 ADAM18Q9Y3Q7 739 aa15.05■□□□□ -0
USP4-201ENST00000265560 MRPS18BQ9Y676 258 aaKnown RBP15.05■□□□□ -0
USP4-201ENST00000265560 IGKV1D-42A0A075B6H8 117 aa15.05■□□□□ -0
USP4-201ENST00000265560 A0A087WUJ7 227 aa15.05■□□□□ -0
USP4-201ENST00000265560 G3V3Y1 287 aa15.05■□□□□ -0
USP4-201ENST00000265560 BLOC1S5-TXNDC5H3BN57 136 aa15.05■□□□□ -0
USP4-201ENST00000265560 SOCS6O14544 535 aa15.05■□□□□ -0
USP4-201ENST00000265560 PLD2O14939 933 aa15.05■□□□□ -0
USP4-201ENST00000265560 SEC14L2O76054 403 aa15.05■□□□□ -0
USP4-201ENST00000265560 F10P00742 488 aa15.05■□□□□ -0
USP4-201ENST00000265560 CLUP10909 449 aa15.05■□□□□ -0
USP4-201ENST00000265560 F8A1P23610 371 aa15.05■□□□□ -0
USP4-201ENST00000265560 PNLIPRP2P54317 469 aa15.05■□□□□ -0
USP4-201ENST00000265560 PGGHGQ32M88 737 aa15.05■□□□□ -0
USP4-201ENST00000265560 PRAMEF20Q5VT98 475 aa15.05■□□□□ -0
USP4-201ENST00000265560 PLBD1Q6P4A8 553 aa15.05■□□□□ -0
USP4-201ENST00000265560 CMIPQ8IY22 773 aa15.05■□□□□ -0
USP4-201ENST00000265560 OR2T33Q8NG76 320 aa15.05■□□□□ -0
USP4-201ENST00000265560 KTI12Q96EK9 354 aaPredicted RBP15.05■□□□□ -0
USP4-201ENST00000265560 MPP4Q96JB8 637 aa15.05■□□□□ -0
USP4-201ENST00000265560 SEC14L4Q9UDX3 406 aa15.05■□□□□ -0
USP4-201ENST00000265560 A0A1W2PPW3 197 aa15.04■□□□□ -0
USP4-201ENST00000265560 OR6C76A6NM76 312 aa15.04■□□□□ -0
USP4-201ENST00000265560 H3BMQ9 156 aa15.04■□□□□ -0
USP4-201ENST00000265560 TO15178 435 aa15.04■□□□□ -0
USP4-201ENST00000265560 FADS1O60427 444 aa15.04■□□□□ -0
USP4-201ENST00000265560 SLC16A1P53985 500 aa15.04■□□□□ -0
USP4-201ENST00000265560 MED22Q15528 200 aa15.04■□□□□ -0
USP4-201ENST00000265560 CLPPQ16740 277 aaPredicted RBP15.04■□□□□ -0
USP4-201ENST00000265560 ANKK1Q8NFD2 765 aa15.04■□□□□ -0
USP4-201ENST00000265560 OR11G2Q8NGC1 345 aa15.04■□□□□ -0
USP4-201ENST00000265560 OR2Y1Q8NGV0 311 aa15.04■□□□□ -0
USP4-201ENST00000265560 RPL3LQ92901 407 aaKnown RBP15.04■□□□□ -0
USP4-201ENST00000265560 COG8Q96MW5 612 aa15.04■□□□□ -0
USP4-201ENST00000265560 ZNF426Q9BUY5 554 aa15.04■□□□□ -0
USP4-201ENST00000265560 POLDIP3Q9BY77 421 aaKnown RBP15.04■□□□□ -0
USP4-201ENST00000265560 C19orf25Q9UFG5 118 aaPredicted RBP15.04■□□□□ -0
USP4-201ENST00000265560 PNMA8CA0A1B0GUJ8 204 aa15.04■□□□□ -0
USP4-201ENST00000265560 ALG1L2C9J202 215 aa15.04■□□□□ -0
USP4-201ENST00000265560 PPM1BO75688 479 aa15.04■□□□□ -0
USP4-201ENST00000265560 DBTP11182 482 aaKnown RBP15.04■□□□□ -0
USP4-201ENST00000265560 RPS5P46782 204 aaKnown RBP15.04■□□□□ -0
USP4-201ENST00000265560 SNRPGP62308 76 aaKnown RBP15.04■□□□□ -0
USP4-201ENST00000265560 WBP2NLQ6ICG8 309 aa15.04■□□□□ -0
USP4-201ENST00000265560 IL20RBQ6UXL0 311 aa15.04■□□□□ -0
USP4-201ENST00000265560 ZNF517Q6ZMY9 492 aaPredicted RBP15.04■□□□□ -0
USP4-201ENST00000265560 RNF113BQ8IZP6 322 aaKnown RBP15.04■□□□□ -0
USP4-201ENST00000265560 OR51L1Q8NGJ5 315 aa15.04■□□□□ -0
USP4-201ENST00000265560 WDR36Q8NI36 951 aaKnown RBP15.04■□□□□ -0
USP4-201ENST00000265560 CT55Q8WUE5 264 aa15.04■□□□□ -0
USP4-201ENST00000265560 MYDGFQ969H8 173 aa15.04■□□□□ -0
USP4-201ENST00000265560 FKBP10Q96AY3 582 aa15.04■□□□□ -0
USP4-201ENST00000265560 SLC38A2Q96QD8 506 aa15.04■□□□□ -0
USP4-201ENST00000265560 SLC25A19Q9HC21 320 aa15.04■□□□□ -0
USP4-201ENST00000265560 HINT3Q9NQE9 182 aaKnown RBP15.04■□□□□ -0
USP4-201ENST00000265560 KLRF1Q9NZS2 232 aa15.04■□□□□ -0
USP4-201ENST00000265560 ICAM5Q9UMF0 924 aa15.04■□□□□ -0
USP4-201ENST00000265560 SURF4O15260 269 aa15.03■□□□□ -0
USP4-201ENST00000265560 ZFAND5O76080 213 aa15.03■□□□□ -0
USP4-201ENST00000265560 ONECUT2O95948 504 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms