RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 OR2C1O95371 312 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 AREGP15514 252 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 NFATC3Q12968 1075 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 DEFB134Q4QY38 66 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 C3orf38Q5JPI3 329 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 ATRNL1Q5VV63 1379 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 JUPP14923 745 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 SFTPDP35247 375 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 EIF2DP41214 584 aaKnown RBP13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 FOLR3P41439 243 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 C6orf136Q5SQH8 315 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 NPRL2Q8WTW4 380 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 SGPP1Q9BX95 441 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 SHARPINQ9H0F6 387 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 DCAF4L2Q8NA75 395 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 OR56B1Q8NGI3 324 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 OR13C5Q8NGS8 318 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 OR13C2Q8NGS9 318 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 MTCH1Q9NZJ7 389 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 PCDHGA1Q9Y5H4 931 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 WIF1Q9Y5W5 379 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 FOXO6A8MYZ6 492 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 CPN1P15169 458 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 GIFP27352 417 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 INTS5Q6P9B9 1019 aaKnown RBP13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 CPNE8Q86YQ8 564 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 TANKQ92844 425 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 KCNA7Q96RP8 456 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 EGLN3Q9H6Z9 239 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 GAREM1Q9H706 876 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 ACSS1Q9NUB1 689 aaPredicted RBP13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 B4GALT6Q9UBX8 382 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 HPNP05981 417 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 TBPL1P62380 186 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 GPR19Q15760 415 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 TREML2Q5T2D2 321 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 APOBEC3HQ6NTF7 200 aaKnown RBP13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 ZNF337Q9Y3M9 751 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 SPEF2Q9C093 1822 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 DESI1Q6ICB0 168 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 APOOLQ6UXV4 268 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 SLC5A8Q8N695 610 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 OR52N2Q8NGI0 321 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 RP1P56715 2156 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 VWDEQ8N2E2 1590 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 TMEM82A0PJX8 343 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 PXT1Q8NFP0 134 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 NMES1Q9C002 83 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 GAB2Q9UQC2 676 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 NNATQ16517 81 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 ADAMTS16Q8TE57 1224 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 ZDHHC7Q9NXF8 308 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 NPAP1Q9NZP6 1156 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 MEIOCA2RUB1 952 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 TMX2-CTNND1H3BSU7 103 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 IGHG1P01857 330 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 G0S2P27469 103 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 SUOXP51687 545 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 GLYR1Q49A26 553 aaPredicted RBP13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 PRICKLE2Q7Z3G6 844 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 CISD2Q8N5K1 135 aaKnown RBP13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 BLNKQ8WV28 456 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 V9GYS6 101 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 RAB40BQ12829 278 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 CD200R1Q8TD46 325 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 ARHGAP39Q9C0H5 1083 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 BARX1Q9HBU1 254 aaPredicted RBP13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 GNG12Q9UBI6 72 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 SPATA31A5Q5VU36 1347 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 SPATA31A7Q8IWB4 1347 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 KIR2DL3P43628 341 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 ACSM1Q08AH1 577 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 TESK1Q15569 626 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 NCBP2-AS2Q69YL0 99 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 AKR1E2Q96JD6 320 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 SAMD8Q96LT4 415 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 METTL9Q9H1A3 318 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 TNFRSF10AO00220 468 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 RPL7L1Q6DKI1 246 aaKnown RBP13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 KRTCAP2Q8N6L1 136 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 DBF4BQ8NFT6 615 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 ST6GALNAC4Q9H4F1 302 aa13.11□□□□□ -0.31
CCDC88A-201ENST00000263630 LOC102723971A0A1B0GUV8 181 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 TGOLN2O43493 480 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 TIMM8AO60220 97 aaPredicted RBP13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 ETV4P43268 484 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 LTBQ06643 244 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 YIPF5Q969M3 257 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 TMEM43Q9BTV4 400 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 MMP28Q9H239 520 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 H3BMQ9 156 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 EBPQ15125 230 aaKnown RBP13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 ADGRF3Q8IZF5 1079 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 CNEP1R1Q8N9A8 125 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 KLRG2A4D1S0 409 aaPredicted RBP13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 C4orf47A7E2U8 309 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 NUDT19A8MXV4 375 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 ADAM11O75078 769 aa13.1□□□□□ -0.31
CCDC88A-201ENST00000263630 MTHFD2P13995 350 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms