RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 OR7G1Q8NGA0 311 aa17.89■□□□□ 0.45
UPF1-201ENST00000262803 ZMYND19Q96E35 227 aaPredicted RBP17.89■□□□□ 0.45
UPF1-201ENST00000262803 ULBP2Q9BZM5 246 aa17.89■□□□□ 0.45
UPF1-201ENST00000262803 EEF1E1-BLOC1S5C9J1V9 151 aa17.89■□□□□ 0.45
UPF1-201ENST00000262803 TOR1AO14656 332 aa17.89■□□□□ 0.45
UPF1-201ENST00000262803 TFAP2AP05549 437 aa17.89■□□□□ 0.45
UPF1-201ENST00000262803 C21orf33P30042 268 aaPredicted RBP17.89■□□□□ 0.45
UPF1-201ENST00000262803 HTR2BP41595 481 aa17.89■□□□□ 0.45
UPF1-201ENST00000262803 ESCO2Q56NI9 601 aa17.89■□□□□ 0.45
UPF1-201ENST00000262803 GAREM2Q75VX8 874 aa17.89■□□□□ 0.45
UPF1-201ENST00000262803 OR4K15Q8NH41 348 aa17.89■□□□□ 0.45
UPF1-201ENST00000262803 CPT1CQ8TCG5 803 aa17.89■□□□□ 0.45
UPF1-201ENST00000262803 CDS1Q92903 461 aa17.89■□□□□ 0.45
UPF1-201ENST00000262803 SORCS2Q96PQ0 1159 aa17.89■□□□□ 0.45
UPF1-201ENST00000262803 NICN1Q9BSH3 213 aa17.89■□□□□ 0.45
UPF1-201ENST00000262803 SPHK1Q9NYA1 384 aa17.89■□□□□ 0.45
UPF1-201ENST00000262803 A0A1W2PPH5 198 aa17.89■□□□□ 0.45
UPF1-201ENST00000262803 F5H5K5 113 aa17.89■□□□□ 0.45
UPF1-201ENST00000262803 AFF3P51826 1226 aaKnown RBP17.89■□□□□ 0.45
UPF1-201ENST00000262803 TNFRSF17Q02223 184 aa17.89■□□□□ 0.45
UPF1-201ENST00000262803 B3GNT8Q7Z7M8 397 aa17.89■□□□□ 0.45
UPF1-201ENST00000262803 SLC35F3Q8IY50 421 aa17.89■□□□□ 0.45
UPF1-201ENST00000262803 METTL4Q8N3J2 472 aa17.89■□□□□ 0.45
UPF1-201ENST00000262803 LHX3Q9UBR4 397 aa17.89■□□□□ 0.45
UPF1-201ENST00000262803 CAMK2AQ9UQM7 478 aa17.89■□□□□ 0.45
UPF1-201ENST00000262803 PRELID3BQ9Y3B1 194 aa17.89■□□□□ 0.45
UPF1-201ENST00000262803 ZNF736B4DX44 427 aaPredicted RBP17.89■□□□□ 0.45
UPF1-201ENST00000262803 ZNF14P17017 642 aaPredicted RBP17.89■□□□□ 0.45
UPF1-201ENST00000262803 EIF2DP41214 584 aaKnown RBP17.89■□□□□ 0.45
UPF1-201ENST00000262803 CX3CR1P49238 355 aa17.89■□□□□ 0.45
UPF1-201ENST00000262803 DCDP81605 110 aaKnown RBP17.89■□□□□ 0.45
UPF1-201ENST00000262803 TP53I3Q53FA7 332 aa17.89■□□□□ 0.45
UPF1-201ENST00000262803 MEX3DQ86XN8 651 aaKnown RBP17.89■□□□□ 0.45
UPF1-201ENST00000262803 MUL1Q969V5 352 aa17.89■□□□□ 0.45
UPF1-201ENST00000262803 NIPAL2Q9H841 368 aa17.89■□□□□ 0.45
UPF1-201ENST00000262803 SDK1Q7Z5N4 2213 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 FAM230AA0A1W2PPH8 454 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 EIF1BO60739 113 aaKnown RBP17.88■□□□□ 0.45
UPF1-201ENST00000262803 ADAM23O75077 832 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 SCRG1O75711 98 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 PTH2RP49190 550 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 PCGF3Q3KNV8 242 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 ZNF681Q96N22 645 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 OR7D2Q96RA2 312 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 SLAMF7Q9NQ25 335 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 SGSHP51688 502 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 TAS2R46P59540 309 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 ZNF616Q08AN1 781 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 MLF2Q15773 248 aaPredicted RBP17.88■□□□□ 0.45
UPF1-201ENST00000262803 PLCXD3Q63HM9 321 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 ANKRD54Q6NXT1 300 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 MEPCEQ7L2J0 689 aaKnown RBP17.88■□□□□ 0.45
UPF1-201ENST00000262803 FNDC9Q8TBE3 224 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 TMEM163Q8TC26 289 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 MACROD1Q9BQ69 325 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 PISDQ9UG56 409 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 VDAC3Q9Y277 283 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 H3BQ06 376 aaPredicted RBP17.88■□□□□ 0.45
UPF1-201ENST00000262803 CPT2P23786 658 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 RGS6P49758 472 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 BLOC1S1P78537 153 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 DEFB103AP81534 67 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 CATR1Q13166 79 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 CMIPQ8IY22 773 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 RDH10Q8IZV5 341 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 OR6T1Q8NGN1 323 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 OR6Q1Q8NGQ2 317 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 FAM171A2A8MVW0 826 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 ALPLP05186 524 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 RAB40ALP0C0E4 278 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 ARSBP15848 533 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 HOXD9P28356 352 aaPredicted RBP17.88■□□□□ 0.45
UPF1-201ENST00000262803 PTGER1P34995 402 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 SF3A2Q15428 464 aaKnown RBP17.88■□□□□ 0.45
UPF1-201ENST00000262803 LILRA2Q8N149 483 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 RAB40AQ8WXH6 277 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 SAP130Q9H0E3 1048 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 METTL9Q9H1A3 318 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 SIT1Q9Y3P8 196 aa17.88■□□□□ 0.45
UPF1-201ENST00000262803 THBS3P49746 956 aa17.87■□□□□ 0.45
UPF1-201ENST00000262803 OR4N2Q8NGD1 307 aa17.87■□□□□ 0.45
UPF1-201ENST00000262803 MZB1Q8WU39 189 aa17.87■□□□□ 0.45
UPF1-201ENST00000262803 MMP28Q9H239 520 aa17.87■□□□□ 0.45
UPF1-201ENST00000262803 USP22Q9UPT9 525 aa17.87■□□□□ 0.45
UPF1-201ENST00000262803 RPH3AQ9Y2J0 694 aaPredicted RBP17.87■□□□□ 0.45
UPF1-201ENST00000262803 F5H5P2 479 aa17.87■□□□□ 0.45
UPF1-201ENST00000262803 RBM39Q14498 530 aaKnown RBP17.87■□□□□ 0.45
UPF1-201ENST00000262803 PGGHGQ32M88 737 aa17.87■□□□□ 0.45
UPF1-201ENST00000262803 ZNF767PQ75MW2 155 aa17.87■□□□□ 0.45
UPF1-201ENST00000262803 GRAMD2AQ8IUY3 354 aa17.87■□□□□ 0.45
UPF1-201ENST00000262803 LRRC56Q8IYG6 542 aaPredicted RBP17.87■□□□□ 0.45
UPF1-201ENST00000262803 OR1J4Q8NGS1 313 aa17.87■□□□□ 0.45
UPF1-201ENST00000262803 GON4LQ3T8J9 2241 aa17.87■□□□□ 0.45
UPF1-201ENST00000262803 A0A0A6YYH2 397 aa17.87■□□□□ 0.45
UPF1-201ENST00000262803 A6NJ64 397 aa17.87■□□□□ 0.45
UPF1-201ENST00000262803 ADAM12O43184 909 aa17.87■□□□□ 0.45
UPF1-201ENST00000262803 SLC5A12Q1EHB4 618 aa17.87■□□□□ 0.45
UPF1-201ENST00000262803 GTPBP8Q8N3Z3 284 aaPredicted RBP17.87■□□□□ 0.45
UPF1-201ENST00000262803 FAM83FQ8NEG4 500 aaPredicted RBP17.87■□□□□ 0.45
UPF1-201ENST00000262803 MALSU1Q96EH3 234 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms