RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 PRICKLE2Q7Z3G6 844 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 KRT77Q7Z794 578 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 OR1J4Q8NGS1 313 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 TMEM163Q8TC26 289 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 ORAI3Q9BRQ5 295 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 LAT2Q9GZY6 243 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 APMAPQ9HDC9 416 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 INIPQ9NRY2 104 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 CNOT2Q9NZN8 540 aaKnown RBP10.67□□□□□ -0.7
VPS4A-201ENST00000254950 GPR55Q9Y2T6 319 aaPredicted RBP10.67□□□□□ -0.7
VPS4A-201ENST00000254950 YARS2Q9Y2Z4 477 aaKnown RBP10.67□□□□□ -0.7
VPS4A-201ENST00000254950 SLC6A5Q9Y345 797 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 DPM1O60762 260 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 DNAJB6O75190 326 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 RPP14O95059 124 aaKnown RBP10.66□□□□□ -0.7
VPS4A-201ENST00000254950 ZNF43P17038 809 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 EDNRAP25101 427 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 NDUFAF6Q330K2 333 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 SLX4IPQ5VYV7 408 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 FCRLBQ6BAA4 426 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 PLAG1Q6DJT9 500 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 ANKRD37Q7Z713 158 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 ZER1Q7Z7L7 766 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 ERI1Q8IV48 349 aaKnown RBP10.66□□□□□ -0.7
VPS4A-201ENST00000254950 UEVLDQ8IX04 471 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 NLGN4YQ8NFZ3 816 aaPredicted RBP10.66□□□□□ -0.7
VPS4A-201ENST00000254950 THAP4Q8WY91 577 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 C12orf43Q96C57 262 aaKnown RBP10.66□□□□□ -0.7
VPS4A-201ENST00000254950 ZG16BQ96DA0 208 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 TNFRSF13CQ96RJ3 184 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 CNN2Q99439 309 aaKnown RBP10.66□□□□□ -0.7
VPS4A-201ENST00000254950 ARHGDIGQ99819 225 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 SEC14L4Q9UDX3 406 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 ASXL3Q9C0F0 2248 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 ARRDC5A6NEK1 342 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 GP1BAP07359 652 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 ANKRD34CP0C6C1 535 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 PRKAR1AP10644 381 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 CELP19835 753 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 MXD1Q05195 221 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 SMN1Q16637 294 aaKnown RBP10.66□□□□□ -0.7
VPS4A-201ENST00000254950 HES3Q5TGS1 186 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 GRINAQ7Z429 371 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 B3GNT8Q7Z7M8 397 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 GPALPP1Q8IXQ4 340 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 ZNF433Q8N7K0 673 aaPredicted RBP10.66□□□□□ -0.7
VPS4A-201ENST00000254950 TTC9Q92623 222 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 KCTD7Q96MP8 289 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 DCSTAMPQ9H295 470 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 MED17Q9NVC6 651 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 STMN3Q9NZ72 180 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 GNG8Q9UK08 70 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 PCDHGA10Q9Y5H3 936 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 MYLKQ15746 1914 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 ASCC3Q8N3C0 2202 aaKnown RBP10.66□□□□□ -0.7
VPS4A-201ENST00000254950 TRAV36DV7A0A075B6V5 113 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 A0A1W2PQM1 296 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 GDF1P27539 372 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 SLC1A3P43003 542 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 RPS5P46782 204 aaKnown RBP10.66□□□□□ -0.7
VPS4A-201ENST00000254950 CYB561P49447 251 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 TRIQKQ629K1 86 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 ANKRD34AQ69YU3 496 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 FAHD1Q6P587 224 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 KCTD18Q6PI47 426 aaPredicted RBP10.66□□□□□ -0.7
VPS4A-201ENST00000254950 PAMR1Q6UXH9 720 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 C19orf18Q8NEA5 215 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 OR4C3Q8NH37 302 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 MED11Q9P086 117 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 KLK4Q9Y5K2 254 aa10.66□□□□□ -0.7
VPS4A-201ENST00000254950 MKI67P46013 3256 aaKnown RBP10.66□□□□□ -0.7
VPS4A-201ENST00000254950 OR2J2O76002 312 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 SPARCP09486 303 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 CD46P15529 392 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 DPP4P27487 766 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 EMDP50402 254 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 ZNF91Q05481 1191 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 SLC3A1Q07837 685 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 MARCH9Q86YJ5 346 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 SPARTQ8N0X7 666 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 SIRT6Q8N6T7 355 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 SDR9C7Q8NEX9 313 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 OR51L1Q8NGJ5 315 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 ZC3H10Q96K80 434 aaKnown RBP10.65□□□□□ -0.7
VPS4A-201ENST00000254950 S100A13Q99584 98 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 DENND4CQ5VZ89 1909 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 COL4A4P53420 1690 aaPredicted RBP10.65□□□□□ -0.7
VPS4A-201ENST00000254950 C2orf16Q68DN1 1984 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 C2orf72A6NCS6 295 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 A6NIZ1 184 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 A8MVM7 634 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 G3V3Y1 287 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 STMND1H3BQB6 276 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 AHCYL1O43865 530 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 RAD1O60671 282 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 EVI2BP34910 448 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 EIF1P41567 113 aaKnown RBP10.65□□□□□ -0.7
VPS4A-201ENST00000254950 TMBIM6P55061 237 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 RAP1BP61224 184 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 RAP1AP62834 184 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms