RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 CCKARP32238 428 aa20.49■□□□□ 0.87
LSM4-201ENST00000252816 IDH2P48735 452 aaKnown RBP20.49■□□□□ 0.87
LSM4-201ENST00000252816 PCYT1AP49585 367 aa20.49■□□□□ 0.87
LSM4-201ENST00000252816 RAC3P60763 192 aa20.49■□□□□ 0.87
LSM4-201ENST00000252816 FADDQ13158 208 aa20.49■□□□□ 0.87
LSM4-201ENST00000252816 C10orf111Q8N326 155 aa20.49■□□□□ 0.87
LSM4-201ENST00000252816 DACH2Q96NX9 599 aa20.49■□□□□ 0.87
LSM4-201ENST00000252816 OR5B2Q96R09 309 aa20.49■□□□□ 0.87
LSM4-201ENST00000252816 SERINC1Q9NRX5 453 aa20.49■□□□□ 0.87
LSM4-201ENST00000252816 THUMPD1Q9NXG2 353 aaKnown RBP20.49■□□□□ 0.87
LSM4-201ENST00000252816 AKAP6Q13023 2319 aa20.49■□□□□ 0.87
LSM4-201ENST00000252816 IGHV3-15A0A0B4J1V0 119 aa20.48■□□□□ 0.87
LSM4-201ENST00000252816 A0A1W2PP18 115 aa20.48■□□□□ 0.87
LSM4-201ENST00000252816 SH3D21A4FU49 640 aa20.48■□□□□ 0.87
LSM4-201ENST00000252816 POU2F1P14859 743 aa20.48■□□□□ 0.87
LSM4-201ENST00000252816 AGTR1P30556 359 aa20.48■□□□□ 0.87
LSM4-201ENST00000252816 APOBEC1P41238 236 aaKnown RBP20.48■□□□□ 0.87
LSM4-201ENST00000252816 GNA13Q14344 377 aa20.48■□□□□ 0.87
LSM4-201ENST00000252816 ZNF836Q6ZNA1 936 aa20.48■□□□□ 0.87
LSM4-201ENST00000252816 FCRLAQ7L513 359 aa20.48■□□□□ 0.87
LSM4-201ENST00000252816 GRINAQ7Z429 371 aa20.48■□□□□ 0.87
LSM4-201ENST00000252816 ADGRG3Q86Y34 549 aa20.48■□□□□ 0.87
LSM4-201ENST00000252816 REXO5Q96IC2 774 aaKnown RBP20.48■□□□□ 0.87
LSM4-201ENST00000252816 SLC39A3Q9BRY0 314 aa20.48■□□□□ 0.87
LSM4-201ENST00000252816 POLDIP3Q9BY77 421 aaKnown RBP20.48■□□□□ 0.87
LSM4-201ENST00000252816 CLEC4MQ9H2X3 399 aaPredicted RBP20.48■□□□□ 0.87
LSM4-201ENST00000252816 RAD21L1Q9H4I0 556 aa20.48■□□□□ 0.87
LSM4-201ENST00000252816 RABEP2Q9H5N1 569 aa20.48■□□□□ 0.87
LSM4-201ENST00000252816 IKZF5Q9H5V7 419 aa20.48■□□□□ 0.87
LSM4-201ENST00000252816 A4GALTQ9NPC4 353 aa20.48■□□□□ 0.87
LSM4-201ENST00000252816 ELOVL5Q9NYP7 299 aa20.48■□□□□ 0.87
LSM4-201ENST00000252816 ABCA4P78363 2273 aa20.48■□□□□ 0.87
LSM4-201ENST00000252816 CDHR4A6H8M9 788 aa20.47■□□□□ 0.87
LSM4-201ENST00000252816 PABPC4LP0CB38 370 aaKnown RBP20.47■□□□□ 0.87
LSM4-201ENST00000252816 UGT2B10P36537 528 aa20.47■□□□□ 0.87
LSM4-201ENST00000252816 KCNJ5P48544 419 aa20.47■□□□□ 0.87
LSM4-201ENST00000252816 EPS8Q12929 822 aa20.47■□□□□ 0.87
LSM4-201ENST00000252816 SYT14P1Q58G82 188 aa20.47■□□□□ 0.87
LSM4-201ENST00000252816 GTF2IRD2BQ6EKJ0 949 aa20.47■□□□□ 0.87
LSM4-201ENST00000252816 DLEU7Q6UYE1 221 aa20.47■□□□□ 0.87
LSM4-201ENST00000252816 GTF2IRD2Q86UP8 949 aa20.47■□□□□ 0.87
LSM4-201ENST00000252816 CLIP4Q8N3C7 705 aa20.47■□□□□ 0.87
LSM4-201ENST00000252816 SIKE1Q9BRV8 207 aa20.47■□□□□ 0.87
LSM4-201ENST00000252816 CHRNA9Q9UGM1 479 aa20.47■□□□□ 0.87
LSM4-201ENST00000252816 ZNF443Q9Y2A4 671 aaPredicted RBP20.47■□□□□ 0.87
LSM4-201ENST00000252816 CHST2Q9Y4C5 530 aa20.47■□□□□ 0.87
LSM4-201ENST00000252816 TESMINQ9Y4I5 508 aa20.47■□□□□ 0.87
LSM4-201ENST00000252816 GMEB1Q9Y692 573 aa20.47■□□□□ 0.87
LSM4-201ENST00000252816 A0A0G2JPF8 293 aa20.46■□□□□ 0.87
LSM4-201ENST00000252816 CFAP73A6NFT4 308 aa20.46■□□□□ 0.87
LSM4-201ENST00000252816 ENO4A6NNW6 628 aa20.46■□□□□ 0.87
LSM4-201ENST00000252816 HNRNPCL2B2RXH8 293 aa20.46■□□□□ 0.87
LSM4-201ENST00000252816 HNRNPCL3B7ZW38 293 aa20.46■□□□□ 0.87
LSM4-201ENST00000252816 FAAHO00519 579 aa20.46■□□□□ 0.87
LSM4-201ENST00000252816 HNRNPCL1O60812 293 aaKnown RBP20.46■□□□□ 0.87
LSM4-201ENST00000252816 GKN3PP0CG01 181 aa20.46■□□□□ 0.87
LSM4-201ENST00000252816 HNRNPCL4P0DMR1 293 aa20.46■□□□□ 0.87
LSM4-201ENST00000252816 RNPS1Q15287 305 aaKnown RBP20.46■□□□□ 0.87
LSM4-201ENST00000252816 EXOC3L2Q2M3D2 409 aa20.46■□□□□ 0.87
LSM4-201ENST00000252816 LIN52Q52LA3 116 aa20.46■□□□□ 0.87
LSM4-201ENST00000252816 TMPPEQ6ZT21 453 aa20.46■□□□□ 0.87
LSM4-201ENST00000252816 TUSC5Q8IXB3 177 aa20.46■□□□□ 0.87
LSM4-201ENST00000252816 SLC25A43Q8WUT9 341 aaPredicted RBP20.46■□□□□ 0.87
LSM4-201ENST00000252816 WFIKKN1Q96NZ8 548 aa20.46■□□□□ 0.87
LSM4-201ENST00000252816 C12orf49Q9H741 205 aa20.46■□□□□ 0.87
LSM4-201ENST00000252816 BCL2L10Q9HD36 194 aa20.46■□□□□ 0.87
LSM4-201ENST00000252816 KLHL13Q9P2N7 655 aa20.46■□□□□ 0.87
LSM4-201ENST00000252816 NDRG3Q9UGV2 375 aa20.46■□□□□ 0.87
LSM4-201ENST00000252816 ING1Q9UK53 422 aaPredicted RBP20.46■□□□□ 0.87
LSM4-201ENST00000252816 TRIM33Q9UPN9 1127 aa20.46■□□□□ 0.87
LSM4-201ENST00000252816 UQCRHLA0A096LP55 91 aa20.45■□□□□ 0.86
LSM4-201ENST00000252816 TMEM247A6NEH6 219 aa20.45■□□□□ 0.86
LSM4-201ENST00000252816 SMAD9O15198 467 aaKnown RBP20.45■□□□□ 0.86
LSM4-201ENST00000252816 PRKD3O94806 890 aa20.45■□□□□ 0.86
LSM4-201ENST00000252816 THBS1P07996 1170 aa20.45■□□□□ 0.86
LSM4-201ENST00000252816 TFPIP10646 304 aa20.45■□□□□ 0.86
LSM4-201ENST00000252816 CCNA2P20248 432 aa20.45■□□□□ 0.86
LSM4-201ENST00000252816 DIO1P49895 249 aa20.45■□□□□ 0.86
LSM4-201ENST00000252816 NUFIP2Q7Z417 695 aaKnown RBP20.45■□□□□ 0.86
LSM4-201ENST00000252816 CDC20BQ86Y33 519 aa20.45■□□□□ 0.86
LSM4-201ENST00000252816 DNAJA3Q96EY1 480 aa20.45■□□□□ 0.86
LSM4-201ENST00000252816 ARL5BQ96KC2 179 aa20.45■□□□□ 0.86
LSM4-201ENST00000252816 TMEM120AQ9BXJ8 343 aa20.45■□□□□ 0.86
LSM4-201ENST00000252816 OR11A1Q9GZK7 315 aa20.45■□□□□ 0.86
LSM4-201ENST00000252816 FGFR1OP2Q9NVK5 253 aa20.45■□□□□ 0.86
LSM4-201ENST00000252816 KLHL28Q9NXS3 571 aa20.45■□□□□ 0.86
LSM4-201ENST00000252816 OSGIN1Q9UJX0 560 aa20.45■□□□□ 0.86
LSM4-201ENST00000252816 TMED7-TICAM2A0A0A6YYA0 188 aa20.44■□□□□ 0.86
LSM4-201ENST00000252816 C16orf97H3BN30 126 aa20.44■□□□□ 0.86
LSM4-201ENST00000252816 PGM3O95394 542 aa20.44■□□□□ 0.86
LSM4-201ENST00000252816 ARAFP10398 606 aa20.44■□□□□ 0.86
LSM4-201ENST00000252816 PPIBP23284 216 aaKnown RBP20.44■□□□□ 0.86
LSM4-201ENST00000252816 TACR3P29371 465 aa20.44■□□□□ 0.86
LSM4-201ENST00000252816 ACAA2P42765 397 aaKnown RBP20.44■□□□□ 0.86
LSM4-201ENST00000252816 SLC1A3P43003 542 aa20.44■□□□□ 0.86
LSM4-201ENST00000252816 GUCY1A3Q02108 690 aa20.44■□□□□ 0.86
LSM4-201ENST00000252816 LARS2Q15031 903 aaKnown RBP20.44■□□□□ 0.86
LSM4-201ENST00000252816 GCNT6Q5T4J0 391 aa20.44■□□□□ 0.86
LSM4-201ENST00000252816 RNF220Q5VTB9 566 aa20.44■□□□□ 0.86
LSM4-201ENST00000252816 PRAMEF8Q5VWM4 474 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms