RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 P2RY2P41231 377 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 RAB28P51157 221 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 NIPAL3Q6P499 406 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 WDR88Q6ZMY6 472 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 LINC00471Q8N535 108 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 ARIH2OSQ8N7S6 290 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 FRMD1Q8N878 549 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 LSM14AQ8ND56 463 aaKnown RBP11.09□□□□□ -0.63
USHBP1-201ENST00000252597 SFXN2Q96NB2 322 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 GDF15Q99988 308 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 SRA1Q9HD15 236 aaKnown RBP11.09□□□□□ -0.63
USHBP1-201ENST00000252597 B3GNT2Q9NY97 397 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 TAS2R10Q9NYW0 307 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 APOBEC3BQ9UH17 382 aaKnown RBP11.09□□□□□ -0.63
USHBP1-201ENST00000252597 IER3IP1Q9Y5U9 82 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 CHD9Q3L8U1 2897 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 ATP6V1G2-DDX39BF2Z307 99 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 H3BUI4 141 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 H7C1C5 153 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 ZNF593O00488 134 aaPredicted RBP11.09□□□□□ -0.63
USHBP1-201ENST00000252597 MPC2O95563 127 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 CXCL10P02778 98 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 DRD2P14416 443 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 ZNF3P17036 446 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 POLR2CP19387 275 aaPredicted RBP11.09□□□□□ -0.63
USHBP1-201ENST00000252597 LCN6P62502 163 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 SQSTM1Q13501 440 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 MELKQ14680 651 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 DEFB110Q30KQ9 67 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 HSD17B12Q53GQ0 312 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 ABHD17CQ6PCB6 329 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 FBXO46Q6PJ61 603 aaPredicted RBP11.09□□□□□ -0.63
USHBP1-201ENST00000252597 MBOAT2Q6ZWT7 520 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 MS4A15Q8N5U1 240 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 METTL27Q8N6F8 245 aaPredicted RBP11.09□□□□□ -0.63
USHBP1-201ENST00000252597 PTP4A1Q93096 173 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 NKD1Q969G9 470 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 LRIG1Q96JA1 1093 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 ACTRT3Q9BYD9 372 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 TSPAN10Q9H1Z9 355 aaPredicted RBP11.09□□□□□ -0.63
USHBP1-201ENST00000252597 ZFP64Q9NPA5 681 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 KCMF1Q9P0J7 381 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 RPS6KB2Q9UBS0 482 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 IGKV1-8A0A0C4DH67 115 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 A0A1B0GTH9 108 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 LOC105371267A0A1B0GV96 52 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 FAM25EA8MYX2 175 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 B8ZZF3 427 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 OR10H2O60403 315 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 ZGLP1P0C6A0 271 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 ITGB8P26012 769 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 PGDP52209 483 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 ZNF542PQ5EBM4 170 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 VASNQ6EMK4 673 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 OR5M10Q6IEU7 315 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 ANKRD33Q7Z3H0 272 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 POGLUT1Q8NBL1 392 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 AICDAQ9GZX7 198 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 TMEM27Q9HBJ8 222 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 NOX4Q9NPH5 578 aa11.09□□□□□ -0.63
USHBP1-201ENST00000252597 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.09□□□□□ -0.63
USHBP1-201ENST00000252597 PLXNA3P51805 1871 aa11.08□□□□□ -0.63
USHBP1-201ENST00000252597 TVP23AA6NH52 213 aa11.08□□□□□ -0.64
USHBP1-201ENST00000252597 CASC3O15234 703 aaKnown RBP11.08□□□□□ -0.64
USHBP1-201ENST00000252597 SELENOFO60613 162 aa11.08□□□□□ -0.64
USHBP1-201ENST00000252597 ZIC2O95409 532 aaPredicted RBP11.08□□□□□ -0.64
USHBP1-201ENST00000252597 HLA-DQA2P01906 255 aa11.08□□□□□ -0.64
USHBP1-201ENST00000252597 FPR3P25089 353 aa11.08□□□□□ -0.64
USHBP1-201ENST00000252597 DCTDP32321 178 aa11.08□□□□□ -0.64
USHBP1-201ENST00000252597 REEP5Q00765 189 aa11.08□□□□□ -0.64
USHBP1-201ENST00000252597 ELAVL3Q14576 367 aaKnown RBP11.08□□□□□ -0.64
USHBP1-201ENST00000252597 PLA1AQ53H76 456 aa11.08□□□□□ -0.64
USHBP1-201ENST00000252597 AKIRIN2Q53H80 203 aa11.08□□□□□ -0.64
USHBP1-201ENST00000252597 TMEM69Q5SWH9 247 aa11.08□□□□□ -0.64
USHBP1-201ENST00000252597 TIGD3Q6B0B8 471 aa11.08□□□□□ -0.64
USHBP1-201ENST00000252597 NDUFAF7Q7L592 441 aa11.08□□□□□ -0.64
USHBP1-201ENST00000252597 ZNF511Q8NB15 262 aa11.08□□□□□ -0.64
USHBP1-201ENST00000252597 NMNAT3Q96T66 252 aa11.08□□□□□ -0.64
USHBP1-201ENST00000252597 C1QTNF2Q9BXJ5 285 aa11.08□□□□□ -0.64
USHBP1-201ENST00000252597 ULBP3Q9BZM4 244 aa11.08□□□□□ -0.64
USHBP1-201ENST00000252597 C20orf85Q9H1P6 137 aa11.08□□□□□ -0.64
USHBP1-201ENST00000252597 ZMAT3Q9HA38 289 aaKnown RBP11.08□□□□□ -0.64
USHBP1-201ENST00000252597 SERGEFQ9UGK8 458 aa11.08□□□□□ -0.64
USHBP1-201ENST00000252597 CFAP54Q96N23 3096 aa11.08□□□□□ -0.64
USHBP1-201ENST00000252597 GXYLT2A0PJZ3 443 aa11.08□□□□□ -0.64
USHBP1-201ENST00000252597 C4orf47A7E2U8 309 aa11.08□□□□□ -0.64
USHBP1-201ENST00000252597 C1QTNF3-AMACRE9PGA6 284 aa11.08□□□□□ -0.64
USHBP1-201ENST00000252597 SGK494L7N484 410 aa11.08□□□□□ -0.64
USHBP1-201ENST00000252597 SBK2P0C263 348 aa11.08□□□□□ -0.64
USHBP1-201ENST00000252597 DDX6P26196 483 aaKnown RBP eCLIP11.08□□□□□ -0.64
USHBP1-201ENST00000252597 MTNR1BP49286 362 aa11.08□□□□□ -0.64
USHBP1-201ENST00000252597 MNX1P50219 401 aaPredicted RBP11.08□□□□□ -0.64
USHBP1-201ENST00000252597 MAP2K6P52564 334 aa11.08□□□□□ -0.64
USHBP1-201ENST00000252597 GBX2P52951 348 aaPredicted RBP11.08□□□□□ -0.64
USHBP1-201ENST00000252597 OPCMLQ14982 345 aa11.08□□□□□ -0.64
USHBP1-201ENST00000252597 PRSS41Q7RTY9 318 aa11.08□□□□□ -0.64
USHBP1-201ENST00000252597 RELL2Q8NC24 303 aaPredicted RBP11.08□□□□□ -0.64
USHBP1-201ENST00000252597 ACOT12Q8WYK0 555 aa11.08□□□□□ -0.64
USHBP1-201ENST00000252597 ST8SIA2Q92186 375 aa11.08□□□□□ -0.64
USHBP1-201ENST00000252597 CNOT9Q92600 299 aaKnown RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms