RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 CNOT9Q92600 299 aaKnown RBP17.29■□□□□ 0.36
CPSF3-201ENST00000238112 PEX11GQ96HA9 241 aa17.29■□□□□ 0.36
CPSF3-201ENST00000238112 WDR92Q96MX6 357 aa17.29■□□□□ 0.36
CPSF3-201ENST00000238112 TNFRSF13CQ96RJ3 184 aa17.29■□□□□ 0.36
CPSF3-201ENST00000238112 SMAD5Q99717 465 aaKnown RBP17.29■□□□□ 0.36
CPSF3-201ENST00000238112 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP17.29■□□□□ 0.36
CPSF3-201ENST00000238112 TMEM168Q9H0V1 697 aa17.29■□□□□ 0.36
CPSF3-201ENST00000238112 POLE3Q9NRF9 147 aa17.29■□□□□ 0.36
CPSF3-201ENST00000238112 CLEC4AQ9UMR7 237 aa17.29■□□□□ 0.36
CPSF3-201ENST00000238112 CDH23Q9H251 3354 aa17.28■□□□□ 0.36
CPSF3-201ENST00000238112 CA3P07451 260 aa17.28■□□□□ 0.36
CPSF3-201ENST00000238112 HOXC4P09017 264 aaPredicted RBP17.28■□□□□ 0.36
CPSF3-201ENST00000238112 DRD5P21918 477 aa17.28■□□□□ 0.36
CPSF3-201ENST00000238112 TNFRSF4P43489 277 aa17.28■□□□□ 0.36
CPSF3-201ENST00000238112 ANGPT1Q15389 498 aa17.28■□□□□ 0.36
CPSF3-201ENST00000238112 FCN2Q15485 313 aa17.28■□□□□ 0.36
CPSF3-201ENST00000238112 CLPPQ16740 277 aaPredicted RBP17.28■□□□□ 0.36
CPSF3-201ENST00000238112 CCDC58Q4VC31 144 aa17.28■□□□□ 0.36
CPSF3-201ENST00000238112 FAM205BPQ63HN1 556 aa17.28■□□□□ 0.36
CPSF3-201ENST00000238112 SSX6Q7RTT6 188 aa17.28■□□□□ 0.36
CPSF3-201ENST00000238112 TOMM5Q8N4H5 51 aa17.28■□□□□ 0.36
CPSF3-201ENST00000238112 OR5T3Q8NGG3 340 aa17.28■□□□□ 0.36
CPSF3-201ENST00000238112 TTTY10Q9BZA0 68 aa17.28■□□□□ 0.36
CPSF3-201ENST00000238112 CHD9Q3L8U1 2897 aa17.28■□□□□ 0.36
CPSF3-201ENST00000238112 A0A1B0GWA3 101 aa17.27■□□□□ 0.36
CPSF3-201ENST00000238112 CT62P0C5K7 136 aa17.27■□□□□ 0.36
CPSF3-201ENST00000238112 STOMP27105 288 aa17.27■□□□□ 0.36
CPSF3-201ENST00000238112 NTSR1P30989 418 aa17.27■□□□□ 0.36
CPSF3-201ENST00000238112 PLAURQ03405 335 aa17.27■□□□□ 0.36
CPSF3-201ENST00000238112 TMEM196Q5HYL7 178 aa17.27■□□□□ 0.36
CPSF3-201ENST00000238112 ZAR1Q86SH2 424 aa17.27■□□□□ 0.36
CPSF3-201ENST00000238112 SHISA5Q8N114 240 aa17.27■□□□□ 0.36
CPSF3-201ENST00000238112 ZNF655Q8N720 491 aaPredicted RBP17.27■□□□□ 0.36
CPSF3-201ENST00000238112 C17orf50Q8WW18 174 aa17.27■□□□□ 0.36
CPSF3-201ENST00000238112 PTCHD1Q96NR3 888 aa17.27■□□□□ 0.36
CPSF3-201ENST00000238112 FLRT3Q9NZU0 649 aa17.27■□□□□ 0.36
CPSF3-201ENST00000238112 TEKT2Q9UIF3 430 aa17.27■□□□□ 0.36
CPSF3-201ENST00000238112 ING4Q9UNL4 249 aa17.27■□□□□ 0.36
CPSF3-201ENST00000238112 NUBP2Q9Y5Y2 271 aa17.27■□□□□ 0.36
CPSF3-201ENST00000238112 CYR61O00622 381 aa17.27■□□□□ 0.35
CPSF3-201ENST00000238112 PITPNAQ00169 270 aa17.27■□□□□ 0.35
CPSF3-201ENST00000238112 GPR18Q14330 331 aa17.27■□□□□ 0.35
CPSF3-201ENST00000238112 TP53I3Q53FA7 332 aa17.27■□□□□ 0.35
CPSF3-201ENST00000238112 ANKRD54Q6NXT1 300 aa17.27■□□□□ 0.35
CPSF3-201ENST00000238112 LYPD4Q6UWN0 246 aa17.27■□□□□ 0.35
CPSF3-201ENST00000238112 GHDCQ8N2G8 530 aa17.27■□□□□ 0.35
CPSF3-201ENST00000238112 FAM98AQ8NCA5 519 aaKnown RBP17.27■□□□□ 0.35
CPSF3-201ENST00000238112 THAP4Q8WY91 577 aa17.27■□□□□ 0.35
CPSF3-201ENST00000238112 FAM3CQ92520 227 aa17.27■□□□□ 0.35
CPSF3-201ENST00000238112 ERMAPQ96PL5 475 aaPredicted RBP17.27■□□□□ 0.35
CPSF3-201ENST00000238112 EVA1AQ9H8M9 152 aa17.27■□□□□ 0.35
CPSF3-201ENST00000238112 CERS4Q9HA82 394 aa17.27■□□□□ 0.35
CPSF3-201ENST00000238112 MCCC2Q9HCC0 563 aa17.27■□□□□ 0.35
CPSF3-201ENST00000238112 ST6GALNAC2Q9UJ37 374 aa17.27■□□□□ 0.35
CPSF3-201ENST00000238112 TRAV1-2A0A0B4J238 106 aa17.26■□□□□ 0.35
CPSF3-201ENST00000238112 A0A1W2PPK0 400 aa17.26■□□□□ 0.35
CPSF3-201ENST00000238112 FABP7O15540 132 aa17.26■□□□□ 0.35
CPSF3-201ENST00000238112 UBL3O95164 117 aa17.26■□□□□ 0.35
CPSF3-201ENST00000238112 MAP3K8P41279 467 aa17.26■□□□□ 0.35
CPSF3-201ENST00000238112 RBM34P42696 430 aaKnown RBP17.26■□□□□ 0.35
CPSF3-201ENST00000238112 CRYZQ08257 329 aaKnown RBP17.26■□□□□ 0.35
CPSF3-201ENST00000238112 SLC36A2Q495M3 483 aa17.26■□□□□ 0.35
CPSF3-201ENST00000238112 RNASE12Q5GAN4 147 aaKnown RBP17.26■□□□□ 0.35
CPSF3-201ENST00000238112 ALG10BQ5I7T1 473 aa17.26■□□□□ 0.35
CPSF3-201ENST00000238112 OR52E2Q8NGJ4 325 aa17.26■□□□□ 0.35
CPSF3-201ENST00000238112 OR5H6Q8NGV6 325 aa17.26■□□□□ 0.35
CPSF3-201ENST00000238112 ZMYND19Q96E35 227 aaPredicted RBP17.26■□□□□ 0.35
CPSF3-201ENST00000238112 IL21RQ9HBE5 538 aa17.26■□□□□ 0.35
CPSF3-201ENST00000238112 ZNF222Q9UK12 451 aa17.26■□□□□ 0.35
CPSF3-201ENST00000238112 MRPS7Q9Y2R9 242 aaKnown RBP17.26■□□□□ 0.35
CPSF3-201ENST00000238112 ATG2BQ96BY7 2078 aa17.26■□□□□ 0.35
CPSF3-201ENST00000238112 C7orf66A4D0T2 115 aa17.26■□□□□ 0.35
CPSF3-201ENST00000238112 IQCJ-SCHIP1C9J366 451 aaPredicted RBP17.26■□□□□ 0.35
CPSF3-201ENST00000238112 FLRT2O43155 660 aa17.26■□□□□ 0.35
CPSF3-201ENST00000238112 ARL6IP5O75915 188 aa17.26■□□□□ 0.35
CPSF3-201ENST00000238112 CD3GP09693 182 aa17.26■□□□□ 0.35
CPSF3-201ENST00000238112 PVRP15151 417 aa17.26■□□□□ 0.35
CPSF3-201ENST00000238112 GBX2P52951 348 aaPredicted RBP17.26■□□□□ 0.35
CPSF3-201ENST00000238112 ACTA2P62736 377 aa17.26■□□□□ 0.35
CPSF3-201ENST00000238112 ACTG2P63267 376 aa17.26■□□□□ 0.35
CPSF3-201ENST00000238112 MGAT2Q10469 447 aa17.26■□□□□ 0.35
CPSF3-201ENST00000238112 GAS6Q14393 721 aa17.26■□□□□ 0.35
CPSF3-201ENST00000238112 ZC3H14Q6PJT7 736 aaKnown RBP17.26■□□□□ 0.35
CPSF3-201ENST00000238112 SLC43A2Q8N370 569 aa17.26■□□□□ 0.35
CPSF3-201ENST00000238112 RFLNBQ8N5W9 214 aa17.26■□□□□ 0.35
CPSF3-201ENST00000238112 OR52R1Q8NGF1 315 aa17.26■□□□□ 0.35
CPSF3-201ENST00000238112 SCMH1Q96GD3 660 aa17.26■□□□□ 0.35
CPSF3-201ENST00000238112 ZFP3Q96NJ6 502 aa17.26■□□□□ 0.35
CPSF3-201ENST00000238112 MYADMQ96S97 322 aa17.26■□□□□ 0.35
CPSF3-201ENST00000238112 TRIM2Q9C040 744 aa17.26■□□□□ 0.35
CPSF3-201ENST00000238112 BRD7Q9NPI1 651 aa17.26■□□□□ 0.35
CPSF3-201ENST00000238112 ABRACLQ9P1F3 81 aa17.26■□□□□ 0.35
CPSF3-201ENST00000238112 TNFRSF10AO00220 468 aa17.25■□□□□ 0.35
CPSF3-201ENST00000238112 TCRBP04435 133 aa17.25■□□□□ 0.35
CPSF3-201ENST00000238112 SNRPBP14678 240 aaKnown RBP17.25■□□□□ 0.35
CPSF3-201ENST00000238112 GDI2P50395 445 aaKnown RBP17.25■□□□□ 0.35
CPSF3-201ENST00000238112 MMP15P51511 669 aa17.25■□□□□ 0.35
CPSF3-201ENST00000238112 HCCSP53701 268 aa17.25■□□□□ 0.35
CPSF3-201ENST00000238112 LYPD8Q6UX82 237 aa17.25■□□□□ 0.35
CPSF3-201ENST00000238112 C9orf62Q8N4C0 152 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms