RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 SIRT4Q9Y6E7 314 aaPredicted RBP10.06□□□□□ -0.8
UPF3A-212ENST00000619079 NINQ8N4C6 2090 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 FXYD6-FXYD2A0A087WZ82 144 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 A0A1B0GTQ1 180 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 NPIPB15A6NHN6 443 aaPredicted RBP10.06□□□□□ -0.8
UPF3A-212ENST00000619079 FLRT2O43155 660 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 CDC123O75794 336 aaPredicted RBP10.06□□□□□ -0.8
UPF3A-212ENST00000619079 ARL6IP5O75915 188 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 ATG12O94817 140 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 SIX6O95475 246 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 NR2F1P10589 423 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 PVALBP20472 110 aaPredicted RBP10.06□□□□□ -0.8
UPF3A-212ENST00000619079 EPHB3P54753 998 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 TAS2R41P59536 307 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 SLBPQ14493 270 aaKnown RBP eCLIP10.06□□□□□ -0.8
UPF3A-212ENST00000619079 CRTC1Q6UUV9 634 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 ZNF600Q6ZNG1 722 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 LINGO2Q7L985 606 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 TCEAL8Q8IYN2 117 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 SPAG16Q8N0X2 631 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 OR2T33Q8NG76 320 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 OR6T1Q8NGN1 323 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 MAFAQ8NHW3 353 aaPredicted RBP10.06□□□□□ -0.8
UPF3A-212ENST00000619079 SMPDL3AQ92484 453 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 UBE2E3Q969T4 207 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 NARS2Q96I59 477 aaKnown RBP10.06□□□□□ -0.8
UPF3A-212ENST00000619079 SEMA4CQ9C0C4 833 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 FXYD6Q9H0Q3 95 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 AUNIPQ9H7T9 357 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 SFXN1Q9H9B4 322 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 DZANK1Q9NVP4 752 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 DYRK1BQ9Y463 629 aa10.06□□□□□ -0.8
UPF3A-212ENST00000619079 LINC01387J3KSC0 135 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 TMEM127O75204 238 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 GATBO75879 557 aaKnown RBP10.05□□□□□ -0.8
UPF3A-212ENST00000619079 KRT33AO76009 404 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 VNN2O95498 520 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 SLC16A8O95907 504 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 TGFB1P01137 390 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 SMIM6P0DI80 62 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 ALPPL2P10696 532 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 EPXP11678 715 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 SNRPBP14678 240 aaKnown RBP10.05□□□□□ -0.8
UPF3A-212ENST00000619079 GNSP15586 552 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 IMPA1P29218 277 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 RFC3P40938 356 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 ANXA11P50995 505 aaKnown RBP10.05□□□□□ -0.8
UPF3A-212ENST00000619079 MAT1AQ00266 395 aaKnown RBP10.05□□□□□ -0.8
UPF3A-212ENST00000619079 E2F1Q01094 437 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 SWI5Q1ZZU3 235 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 PRSS53Q2L4Q9 553 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 SYTL3Q4VX76 610 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 FAM27D1Q5T7N8 215 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 LRRN1Q6UXK5 716 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 HDDC3Q8N4P3 179 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 C12orf45Q8N5I9 185 aaPredicted RBP10.05□□□□□ -0.8
UPF3A-212ENST00000619079 OR4Q3Q8NH05 313 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 ZNF671Q8TAW3 534 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 BRIX1Q8TDN6 353 aaKnown RBP10.05□□□□□ -0.8
UPF3A-212ENST00000619079 PIGKQ92643 395 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 ART5Q96L15 291 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 PIGMQ9H3S5 423 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 BCL2L10Q9HD36 194 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 AHSPQ9NZD4 102 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 MAFFQ9ULX9 164 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 C5orf42Q9H799 3197 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 UNC80Q8N2C7 3258 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 A0A0G2JPF8 293 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 HNRNPCL3B7ZW38 293 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 DISC1C4P0D8 188 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 ZNF821O75541 412 aaPredicted RBP10.05□□□□□ -0.8
UPF3A-212ENST00000619079 CH25HO95992 272 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 S100A6P06703 90 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 HNRNPCL4P0DMR1 293 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 MGMTP16455 207 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 ATF1P18846 271 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 MAT2AP31153 395 aaKnown RBP10.05□□□□□ -0.8
UPF3A-212ENST00000619079 NRG3P56975 720 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 LSM11P83369 360 aaKnown RBP eCLIP10.05□□□□□ -0.8
UPF3A-212ENST00000619079 DLX2Q07687 328 aaPredicted RBP10.05□□□□□ -0.8
UPF3A-212ENST00000619079 ST3GAL3Q11203 375 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 FGL2Q14314 439 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 MPPED2Q15777 294 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 ACSM3Q53FZ2 586 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 APOOLQ6UXV4 268 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 BPIFCQ8NFQ6 507 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 C15orf40Q8WUR7 153 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 FCAMRQ8WWV6 532 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 TSNAXQ99598 290 aaKnown RBP10.05□□□□□ -0.8
UPF3A-212ENST00000619079 LINC00597Q9H2U6 94 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 RASL12Q9NYN1 266 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 CNIH4Q9P003 139 aa10.05□□□□□ -0.8
UPF3A-212ENST00000619079 F5H5P2 479 aa10.04□□□□□ -0.8
UPF3A-212ENST00000619079 SAP18O00422 153 aaKnown RBP10.04□□□□□ -0.8
UPF3A-212ENST00000619079 STC2O76061 302 aa10.04□□□□□ -0.8
UPF3A-212ENST00000619079 KLHL18O94889 574 aa10.04□□□□□ -0.8
UPF3A-212ENST00000619079 NDUFB6O95139 128 aa10.04□□□□□ -0.8
UPF3A-212ENST00000619079 SPDEFO95238 335 aa10.04□□□□□ -0.8
UPF3A-212ENST00000619079 IGSF6O95976 241 aa10.04□□□□□ -0.8
UPF3A-212ENST00000619079 KLKB1P03952 638 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms