RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 RYKP34925 604 aa15.14■□□□□ 0.01
TRIM28-215ENST00000601150 SFTPDP35247 375 aa15.14■□□□□ 0.01
TRIM28-215ENST00000601150 ASCL1P50553 236 aa15.14■□□□□ 0.01
TRIM28-215ENST00000601150 FOXF2Q12947 444 aa15.14■□□□□ 0.01
TRIM28-215ENST00000601150 SELENBP1Q13228 472 aa15.14■□□□□ 0.01
TRIM28-215ENST00000601150 LARS2Q15031 903 aaKnown RBP15.14■□□□□ 0.01
TRIM28-215ENST00000601150 PON3Q15166 354 aa15.14■□□□□ 0.01
TRIM28-215ENST00000601150 MAPRE2Q15555 327 aa15.14■□□□□ 0.01
TRIM28-215ENST00000601150 ZSWIM7Q19AV6 140 aa15.14■□□□□ 0.01
TRIM28-215ENST00000601150 HBMQ6B0K9 141 aa15.14■□□□□ 0.01
TRIM28-215ENST00000601150 VRK2Q86Y07 508 aa15.14■□□□□ 0.01
TRIM28-215ENST00000601150 ZNF440Q8IYI8 595 aa15.14■□□□□ 0.01
TRIM28-215ENST00000601150 GCNT2Q8N0V5 402 aa15.14■□□□□ 0.01
TRIM28-215ENST00000601150 C10orf111Q8N326 155 aa15.14■□□□□ 0.01
TRIM28-215ENST00000601150 FNDC9Q8TBE3 224 aa15.14■□□□□ 0.01
TRIM28-215ENST00000601150 MARVELD3Q96A59 401 aa15.14■□□□□ 0.01
TRIM28-215ENST00000601150 ANKRD27Q96NW4 1050 aa15.14■□□□□ 0.01
TRIM28-215ENST00000601150 CGREF1Q99674 301 aa15.14■□□□□ 0.01
TRIM28-215ENST00000601150 SPOCK3Q9BQ16 436 aa15.14■□□□□ 0.01
TRIM28-215ENST00000601150 ENKD1Q9H0I2 346 aa15.14■□□□□ 0.01
TRIM28-215ENST00000601150 ZNF443Q9Y2A4 671 aaPredicted RBP15.14■□□□□ 0.01
TRIM28-215ENST00000601150 CENPEQ02224 2701 aa15.13■□□□□ 0.01
TRIM28-215ENST00000601150 FBP2O00757 339 aa15.13■□□□□ 0.01
TRIM28-215ENST00000601150 SLC22A2O15244 555 aa15.13■□□□□ 0.01
TRIM28-215ENST00000601150 CXCL13O43927 109 aa15.13■□□□□ 0.01
TRIM28-215ENST00000601150 PGM3O95394 542 aa15.13■□□□□ 0.01
TRIM28-215ENST00000601150 SYNGR4O95473 234 aa15.13■□□□□ 0.01
TRIM28-215ENST00000601150 CRHP06850 196 aa15.13■□□□□ 0.01
TRIM28-215ENST00000601150 SHC1P29353 583 aa15.13■□□□□ 0.01
TRIM28-215ENST00000601150 AGFG1P52594 562 aaKnown RBP15.13■□□□□ 0.01
TRIM28-215ENST00000601150 DLX5P56178 289 aa15.13■□□□□ 0.01
TRIM28-215ENST00000601150 CDK6Q00534 326 aa15.13■□□□□ 0.01
TRIM28-215ENST00000601150 MERTKQ12866 999 aa15.13■□□□□ 0.01
TRIM28-215ENST00000601150 RNF220Q5VTB9 566 aa15.13■□□□□ 0.01
TRIM28-215ENST00000601150 C3orf33Q6P1S2 294 aa15.13■□□□□ 0.01
TRIM28-215ENST00000601150 MEX3BQ6ZN04 569 aaKnown RBP15.13■□□□□ 0.01
TRIM28-215ENST00000601150 ZNF836Q6ZNA1 936 aa15.13■□□□□ 0.01
TRIM28-215ENST00000601150 PLEKHM3Q6ZWE6 761 aa15.13■□□□□ 0.01
TRIM28-215ENST00000601150 ACBD4Q8NC06 268 aa15.13■□□□□ 0.01
TRIM28-215ENST00000601150 ATP6V1C2Q8NEY4 427 aa15.13■□□□□ 0.01
TRIM28-215ENST00000601150 NFKBIDQ8NI38 313 aa15.13■□□□□ 0.01
TRIM28-215ENST00000601150 LRRC46Q96FV0 321 aa15.13■□□□□ 0.01
TRIM28-215ENST00000601150 PRRG4Q9BZD6 226 aa15.13■□□□□ 0.01
TRIM28-215ENST00000601150 TMEM38AQ9H6F2 299 aa15.13■□□□□ 0.01
TRIM28-215ENST00000601150 RNF122Q9H9V4 155 aa15.13■□□□□ 0.01
TRIM28-215ENST00000601150 SERINC1Q9NRX5 453 aa15.13■□□□□ 0.01
TRIM28-215ENST00000601150 IFT52Q9Y366 437 aa15.13■□□□□ 0.01
TRIM28-215ENST00000601150 CAPN7Q9Y6W3 813 aa15.13■□□□□ 0.01
TRIM28-215ENST00000601150 A0A1W2PNV4 684 aa15.12■□□□□ 0.01
TRIM28-215ENST00000601150 CDHR4A6H8M9 788 aa15.12■□□□□ 0.01
TRIM28-215ENST00000601150 CYSRT1A8MQ03 144 aa15.12■□□□□ 0.01
TRIM28-215ENST00000601150 BBIP1A8MTZ0 92 aa15.12■□□□□ 0.01
TRIM28-215ENST00000601150 FAAHO00519 579 aa15.12■□□□□ 0.01
TRIM28-215ENST00000601150 AP3D1O14617 1153 aa15.12■□□□□ 0.01
TRIM28-215ENST00000601150 UQCRBP14927 111 aa15.12■□□□□ 0.01
TRIM28-215ENST00000601150 ETS2P15036 469 aa15.12■□□□□ 0.01
TRIM28-215ENST00000601150 IGFBP2P18065 325 aa15.12■□□□□ 0.01
TRIM28-215ENST00000601150 IDH2P48735 452 aaKnown RBP15.12■□□□□ 0.01
TRIM28-215ENST00000601150 CARD18P57730 90 aa15.12■□□□□ 0.01
TRIM28-215ENST00000601150 TRMT5Q32P41 509 aaKnown RBP15.12■□□□□ 0.01
TRIM28-215ENST00000601150 TMEM176BQ3YBM2 270 aaPredicted RBP15.12■□□□□ 0.01
TRIM28-215ENST00000601150 FBXL19-AS1Q494R0 122 aa15.12■□□□□ 0.01
TRIM28-215ENST00000601150 MMEL1Q495T6 779 aa15.12■□□□□ 0.01
TRIM28-215ENST00000601150 COQ5Q5HYK3 327 aa15.12■□□□□ 0.01
TRIM28-215ENST00000601150 CRYBG3Q68DQ2 2970 aa15.12■□□□□ 0.01
TRIM28-215ENST00000601150 REEP3Q6NUK4 255 aa15.12■□□□□ 0.01
TRIM28-215ENST00000601150 PPP4R4Q6NUP7 873 aa15.12■□□□□ 0.01
TRIM28-215ENST00000601150 GRINAQ7Z429 371 aa15.12■□□□□ 0.01
TRIM28-215ENST00000601150 SPATA21Q7Z572 469 aa15.12■□□□□ 0.01
TRIM28-215ENST00000601150 KRT73Q86Y46 540 aa15.12■□□□□ 0.01
TRIM28-215ENST00000601150 OSTF1Q92882 214 aa15.12■□□□□ 0.01
TRIM28-215ENST00000601150 SPATA9Q9BWV2 254 aa15.12■□□□□ 0.01
TRIM28-215ENST00000601150 ARMC7Q9H6L4 198 aa15.12■□□□□ 0.01
TRIM28-215ENST00000601150 TIGARQ9NQ88 270 aa15.12■□□□□ 0.01
TRIM28-215ENST00000601150 RLIMQ9NVW2 624 aa15.12■□□□□ 0.01
TRIM28-215ENST00000601150 MCTS1Q9ULC4 181 aaKnown RBP15.12■□□□□ 0.01
TRIM28-215ENST00000601150 CFAP73A6NFT4 308 aa15.11■□□□□ 0.01
TRIM28-215ENST00000601150 EEF1E1-BLOC1S5C9J1V9 151 aa15.11■□□□□ 0.01
TRIM28-215ENST00000601150 SYT5O00445 386 aa15.11■□□□□ 0.01
TRIM28-215ENST00000601150 EEF1E1O43324 174 aaKnown RBP15.11■□□□□ 0.01
TRIM28-215ENST00000601150 CCDC22O60826 627 aa15.11■□□□□ 0.01
TRIM28-215ENST00000601150 ADAM11O75078 769 aa15.11■□□□□ 0.01
TRIM28-215ENST00000601150 TNFSF13O75888 250 aa15.11■□□□□ 0.01
TRIM28-215ENST00000601150 AQP8O94778 261 aa15.11■□□□□ 0.01
TRIM28-215ENST00000601150 PABPC4LP0CB38 370 aaKnown RBP15.11■□□□□ 0.01
TRIM28-215ENST00000601150 SLC6A2P23975 617 aa15.11■□□□□ 0.01
TRIM28-215ENST00000601150 SLC7A1P30825 629 aa15.11■□□□□ 0.01
TRIM28-215ENST00000601150 APOBEC1P41238 236 aaKnown RBP15.11■□□□□ 0.01
TRIM28-215ENST00000601150 SEC24CP53992 1094 aa15.11■□□□□ 0.01
TRIM28-215ENST00000601150 MTPNP58546 118 aa15.11■□□□□ 0.01
TRIM28-215ENST00000601150 EPS8Q12929 822 aa15.11■□□□□ 0.01
TRIM28-215ENST00000601150 CYLC2Q14093 348 aaPredicted RBP15.11■□□□□ 0.01
TRIM28-215ENST00000601150 SCARB2Q14108 478 aa15.11■□□□□ 0.01
TRIM28-215ENST00000601150 ZNF311Q5JNZ3 666 aa15.11■□□□□ 0.01
TRIM28-215ENST00000601150 SNX32Q86XE0 403 aa15.11■□□□□ 0.01
TRIM28-215ENST00000601150 CLIP4Q8N3C7 705 aa15.11■□□□□ 0.01
TRIM28-215ENST00000601150 SLC25A43Q8WUT9 341 aaPredicted RBP15.11■□□□□ 0.01
TRIM28-215ENST00000601150 RNASE6Q93091 150 aaKnown RBP15.11■□□□□ 0.01
TRIM28-215ENST00000601150 ELAC2Q9BQ52 826 aaKnown RBP15.11■□□□□ 0.01
TRIM28-215ENST00000601150 CCDC106Q9BWC9 280 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms